Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 0.0e+00 1267.7 692 100.0
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 1.5e-263 912.9 714 74.6
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 1.9e-250 869.4 698 75.9
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 4.2e-250 868.2 696 75.6
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 4.2e-250 868.2 696 75.6
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 4.2e-250 868.2 696 75.6
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 4.2e-242 841.6 709 70.0
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 1.0e-240 837.0 697 74.2
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.2e-225 786.9 714 67.6
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 1.1e-221 773.9 717 65.0
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 3.6e-201 705.7 532 77.4
AL52U10020 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 2.2e-182 643.3 714 58.5
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 1.6e-180 637.1 716 61.3
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.4e-120 437.2 638 49.5
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 3.5e-116 423.3 580 49.7
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.0e-87 327.8 370 59.5
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 5.6e-29 133.7 643 30.3
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 1.6e-28 132.1 479 32.6
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 5.8e-26 123.6 313 34.2
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 2.9e-25 121.3 346 35.3
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 8.4e-25 119.8 667 29.8
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 1.1e-24 119.4 716 27.4
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 1.9e-24 118.6 489 31.5
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 4.2e-24 117.5 542 30.4
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.2e-24 117.5 297 38.4
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 4.2e-24 117.5 289 37.0
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 1.6e-23 115.5 349 33.2
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 2.7e-23 114.8 661 30.0
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 4.6e-23 114.0 546 28.6
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 1.0e-22 112.8 238 39.1
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 1.3e-22 112.5 331 36.0
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.7e-22 112.1 294 37.4
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 1.7e-22 112.1 552 29.2
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 1.1e-21 109.4 595 28.1
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 1.5e-21 109.0 368 36.1
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 3.3e-21 107.8 366 34.4
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 7.3e-21 106.7 770 27.3
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 3.6e-20 104.4 114 62.3
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 4.8e-20 104.0 497 29.8
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 8.1e-20 103.2 470 31.9
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.1e-19 102.8 511 30.9
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.1e-19 102.8 723 28.2
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.4e-19 102.4 472 29.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 1.4e-19 102.4 447 32.0
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 1.8e-19 102.1 346 32.1
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 4.0e-19 100.9 255 36.5
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 1.2e-18 99.4 456 27.0
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.2e-18 99.4 328 36.0
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.5e-18 99.0 372 32.0
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 1.5e-18 99.0 413 30.5
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 2.0e-18 98.6 321 38.6
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 2.6e-18 98.2 452 31.4
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 3.4e-18 97.8 357 32.2
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.5e-18 97.4 270 35.6
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 4.5e-18 97.4 436 29.8
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 7.6e-18 96.7 71 57.7
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.2e-17 95.1 450 27.8
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 2.9e-17 94.7 57 78.9
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 2.9e-17 94.7 57 78.9
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 2.9e-17 94.7 296 35.5
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 2.9e-17 94.7 654 24.8
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 4.9e-17 94.0 671 27.0
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 4.9e-17 94.0 656 25.8
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 1.1e-16 92.8 493 30.8
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 1.4e-16 92.4 627 26.5
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 1.9e-16 92.0 833 28.3
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 1.9e-16 92.0 280 36.8
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 1.9e-16 92.0 258 34.9
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 1.9e-16 92.0 458 28.2
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 3.2e-16 91.3 649 26.8
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 9.3e-16 89.7 483 30.4
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.2e-15 89.4 645 27.4
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.2e-15 89.4 420 34.3
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 2.7e-15 88.2 314 35.4
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 4.6e-15 87.4 137 54.0
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 1.3e-14 85.9 593 26.3
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 1.8e-14 85.5 109 42.2
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 2.3e-14 85.1 501 30.1
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 2.3e-14 85.1 110 47.3
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 2.3e-14 85.1 367 35.4
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 2.3e-14 85.1 271 35.8
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 5.1e-14 84.0 679 27.1
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 5.1e-14 84.0 569 25.8
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 8.7e-14 83.2 895 25.9
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.1e-13 82.8 113 51.3
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.1e-13 82.8 690 26.2
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 1.5e-13 82.4 182 33.5
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 1.9e-13 82.0 635 26.9
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 2.5e-13 81.6 385 28.1
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.3e-13 80.9 674 27.4
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 4.3e-13 80.9 322 33.9
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 4.3e-13 80.9 182 36.8
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.3e-12 79.3 634 27.0
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 1.3e-12 79.3 334 32.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.6e-12 79.0 521 29.0
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 2.1e-12 78.6 829 25.2
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.7e-12 77.8 617 28.7
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.7e-12 77.8 346 32.9
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 3.7e-12 77.8 531 26.0
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 4.8e-12 77.4 463 29.8
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 8.1e-12 76.6 63 58.7
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 1.1e-11 76.3 514 29.4
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.1e-11 76.3 640 26.7
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 9.0e-11 73.2 701 26.7
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 2.0e-10 72.0 269 34.2
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 3.4e-10 71.2 352 31.5
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 5.8e-10 70.5 830 24.9
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 9.9e-10 69.7 388 31.2
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 9.9e-10 69.7 368 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 1.7e-09 68.9 149 37.6
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.7e-09 68.9 556 26.6
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 8.4e-09 66.6 348 35.3
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 1.1e-08 66.2 231 33.3
SMO147G0117 Selaginella moellendorffii HOM05D010535 ORTHO05D005895 1.1e-08 66.2 70 50.0
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.4e-08 65.9 68 42.6
BcaB08g36039 Brassica carinata HOM05D010535 ORTHO05D005895 3.2e-08 64.7 203 35.0
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 4.2e-08 64.3 157 38.9
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 5.5e-08 63.9 122 37.7
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 1.3e-06 59.3 492 25.8
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.8e-06 58.9 456 23.7
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.8e-06 58.9 147 29.9
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 5.1e-06 57.4 109 34.9
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 5.1e-06 57.4 182 26.9
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 8.7e-06 56.6 332 27.7


User provided reference genes

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