Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 0.0e+00 1167.5 747 100.0
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 2.6e-234 815.8 719 75.7
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 9.4e-232 807.4 721 77.3
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 1.4e-227 793.5 719 76.5
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 4.4e-221 771.9 721 73.9
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 2.3e-217 759.6 722 75.1
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 7.2e-216 754.6 722 74.2
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 2.1e-215 753.1 718 73.8
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 4.9e-212 741.9 722 73.0
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 1.1e-211 740.7 507 81.7
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 3.2e-187 659.4 675 70.8
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 2.0e-136 490.7 766 55.1
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 8.8e-129 465.3 507 55.6
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.6e-98 364.8 536 47.4
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 8.3e-95 352.4 525 44.8
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 1.3e-92 345.1 523 44.0
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 2.3e-92 344.4 546 42.1
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 5.2e-89 333.2 517 43.5
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 9.8e-88 328.9 573 41.4
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 3.7e-87 327.0 509 43.2
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.1e-86 325.5 537 42.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 1.9e-86 324.7 551 42.1
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 1.9e-86 324.7 552 43.5
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 5.4e-86 323.2 511 42.9
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.7e-85 320.9 549 42.4
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 1.0e-84 318.9 558 42.3
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 3.0e-84 317.4 492 44.5
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 1.9e-83 314.7 549 43.2
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 2.5e-83 314.3 541 43.8
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 7.3e-83 312.8 564 39.9
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 9.5e-83 312.4 394 49.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 1.2e-82 312.0 543 41.6
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 1.8e-81 308.1 541 39.9
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 4.4e-80 303.5 571 40.3
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 2.9e-79 300.8 517 43.1
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 8.3e-79 299.3 563 38.9
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.1e-78 298.9 543 42.5
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 4.1e-78 297.0 519 42.2
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 5.4e-78 296.6 560 39.8
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 1.6e-77 295.0 536 40.9
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 7.8e-77 292.7 523 41.3
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.3e-76 292.0 559 40.1
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.3e-76 292.0 560 39.8
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.7e-76 291.6 560 39.6
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.7e-76 291.6 530 41.3
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.9e-76 290.4 546 40.1
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 6.6e-76 289.7 546 39.7
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 6.6e-76 289.7 569 40.2
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 8.6e-76 289.3 519 40.3
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 2.5e-75 287.7 489 42.5
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 7.3e-75 286.2 550 39.6
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 7.3e-75 286.2 580 41.4
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 7.3e-75 286.2 541 41.8
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.5e-75 285.8 546 39.9
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.6e-74 285.0 513 41.9
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.6e-74 283.9 549 39.5
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 3.6e-74 283.9 503 40.8
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.7e-74 283.5 547 40.6
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 4.7e-74 283.5 588 40.0
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 6.2e-74 283.1 562 40.2
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.1e-73 282.3 439 39.9
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 2.3e-73 281.2 568 39.3
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 3.1e-73 280.8 573 39.3
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 6.8e-73 279.6 572 40.7
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 2.0e-72 278.1 515 40.2
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.7e-71 275.0 587 39.9
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.6e-69 268.5 586 37.5
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.6e-69 268.5 487 41.7
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 2.3e-68 264.6 528 37.9
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 3.9e-68 263.8 379 44.3
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 7.3e-67 259.6 579 39.7
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 7.3e-67 259.6 503 40.0
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 2.4e-65 254.6 519 37.4
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 4.0e-65 253.8 579 38.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 5.2e-65 253.4 590 35.6
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 1.7e-63 248.4 560 36.6
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.2e-63 248.1 580 38.1
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.8e-63 247.3 550 37.3
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 3.2e-62 244.2 549 36.4
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 4.2e-62 243.8 540 37.2
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 2.1e-61 241.5 536 36.4
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 3.5e-61 240.7 532 37.2
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 8.1e-58 229.6 500 37.2
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 1.8e-57 228.4 601 36.8
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 5.8e-56 223.4 509 38.5
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 6.4e-55 219.9 525 37.1
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.6e-53 215.3 605 33.4
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 3.5e-53 214.2 495 36.2
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 4.6e-53 213.8 507 35.9
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 8.1e-50 203.0 600 31.8
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 1.5e-48 198.7 570 33.7
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 3.4e-48 197.6 503 33.8
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 5.8e-48 196.8 262 44.7
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 4.3e-43 180.6 318 40.3
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 1.8e-41 175.3 572 30.2
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.5e-38 164.9 371 37.5
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 3.9e-36 157.5 394 34.8
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 5.8e-32 143.7 190 45.8
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 5.0e-31 140.6 175 46.3
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.9e-30 138.7 289 36.3
BcaB08g35874 Brassica carinata HOM05D006512 ORTHO05D008027 2.5e-30 138.3 375 38.4
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 6.1e-29 133.7 333 32.4
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 1.7e-23 115.5 539 28.8
BcaC01g06346 Brassica carinata HOM05D006512 ORTHO05D008027 1.3e-18 99.4 80 68.8
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-09 69.7 80 46.2
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 3.5e-08 64.7 59 47.5
BcaC04g20270 Brassica carinata HOM05D006512 ORTHO05D008027 2.5e-06 58.5 60 56.7
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 5.5e-06 57.4 149 28.9


User provided reference genes

Program Settings