Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 6.7e-100 367.5 201 100.0
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 9.4e-70 267.3 214 69.2
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 9.5e-62 240.7 187 70.6
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 6.8e-60 234.6 212 68.4
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.7e-58 229.9 214 63.1
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 5.6e-54 214.9 215 63.7
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.4e-25 119.8 230 45.2
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 2.1e-13 80.1 184 37.5
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 8.1e-13 78.2 120 39.2
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.8e-12 77.0 132 38.6
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 2.4e-12 76.6 111 42.3
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 3.1e-12 76.3 137 36.5
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 5.3e-12 75.5 132 40.9
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 6.9e-12 75.1 117 38.5
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 6.9e-12 75.1 117 38.5
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 6.9e-12 75.1 117 38.5
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 9.0e-12 74.7 197 36.0
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.5e-11 73.9 125 39.2
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.5e-11 73.9 131 41.2
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 2.0e-11 73.6 122 37.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 2.0e-11 73.6 194 34.0
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.0e-11 73.6 126 39.7
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 3.4e-11 72.8 199 33.2
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 3.4e-11 72.8 124 40.3
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.4e-11 72.8 137 39.4
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 4.5e-11 72.4 46 73.9
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 7.6e-11 71.6 127 41.7
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 9.9e-11 71.2 121 37.2
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.3e-10 70.9 125 36.8
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-10 70.9 187 34.8
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.3e-10 70.9 39 79.5
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 1.3e-10 70.9 128 35.2
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 1.7e-10 70.5 143 38.5
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.7e-10 70.5 128 36.7
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.2e-10 70.1 49 69.4
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.9e-10 69.7 130 39.2
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.9e-10 69.7 130 37.7
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.9e-10 69.7 149 40.3
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 2.9e-10 69.7 203 34.0
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 3.8e-10 69.3 178 32.0
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.8e-10 69.3 47 68.1
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 4.9e-10 68.9 132 37.9
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.9e-10 68.9 119 40.3
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.9e-10 68.9 118 38.1
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 6.4e-10 68.6 132 38.6
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 6.4e-10 68.6 37 78.4
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 8.4e-10 68.2 120 39.2
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.4e-10 68.2 134 39.6
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.1e-09 67.8 46 63.0
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.1e-09 67.8 47 63.8
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.1e-09 67.8 49 69.4
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-09 67.8 123 38.2
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.1e-09 67.8 123 38.2
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.1e-09 67.8 154 39.6
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 1.1e-09 67.8 132 38.6
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.4e-09 67.4 115 37.4
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.4e-09 67.4 220 32.3
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.4e-09 67.4 151 34.4
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 1.4e-09 67.4 49 61.2
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.4e-09 67.4 45 66.7
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.9e-09 67.0 49 63.3
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.9e-09 67.0 141 37.6
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.9e-09 67.0 164 43.3
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.4e-09 66.6 110 41.8
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.4e-09 66.6 47 66.0
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 2.4e-09 66.6 125 40.8
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 3.2e-09 66.2 44 68.2
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 4.2e-09 65.9 32 84.4
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 4.2e-09 65.9 32 84.4
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 4.2e-09 65.9 123 37.4
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.2e-09 65.9 114 36.0
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.2e-09 65.9 151 34.4
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 4.2e-09 65.9 120 35.0
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 4.2e-09 65.9 125 39.2
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 5.4e-09 65.5 36 75.0
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 5.4e-09 65.5 35 77.1
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 7.1e-09 65.1 135 37.0
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.1e-09 65.1 130 40.8
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 7.1e-09 65.1 130 40.8
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 7.1e-09 65.1 127 36.2
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 7.1e-09 65.1 39 69.2
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 7.1e-09 65.1 39 66.7
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 9.3e-09 64.7 154 40.3
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 9.3e-09 64.7 151 33.8
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 9.3e-09 64.7 46 58.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 9.3e-09 64.7 42 69.0
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.3e-09 64.7 40 75.0
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 9.3e-09 64.7 39 64.1
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 1.2e-08 64.3 42 69.0
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 1.2e-08 64.3 42 69.0
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.2e-08 64.3 42 69.0
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.2e-08 64.3 49 65.3
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 1.2e-08 64.3 202 33.7
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 1.6e-08 63.9 126 45.2
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.6e-08 63.9 100 38.0
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.6e-08 63.9 100 38.0
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 1.6e-08 63.9 126 45.2
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.6e-08 63.9 100 38.0
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 1.6e-08 63.9 126 45.2
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.1e-08 63.5 168 32.1
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 2.1e-08 63.5 125 36.8
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 2.1e-08 63.5 39 64.1
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.1e-08 63.5 125 36.0
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 2.1e-08 63.5 49 63.3
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 2.7e-08 63.2 188 35.1
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.7e-08 63.2 107 42.1
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.7e-08 63.2 49 61.2
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 2.7e-08 63.2 194 32.0
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 2.7e-08 63.2 49 63.3
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 3.5e-08 62.8 190 32.1
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 4.6e-08 62.4 117 39.3
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.6e-08 62.4 38 68.4
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 4.6e-08 62.4 119 35.3
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 6.0e-08 62.0 46 60.9
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 6.0e-08 62.0 181 29.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 6.0e-08 62.0 46 60.9
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 6.0e-08 62.0 31 77.4
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 7.9e-08 61.6 35 71.4
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.0e-07 61.2 126 38.1
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.0e-07 61.2 126 41.3
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-07 61.2 46 60.9
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.0e-07 61.2 154 33.1
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.0e-07 61.2 146 34.9
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.0e-07 61.2 40 60.0
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-07 60.8 148 37.8
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-07 60.8 126 44.4
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.3e-07 60.8 46 58.7
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.3e-07 60.8 151 33.1
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.3e-07 60.8 114 38.6
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.8e-07 60.5 187 34.2
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.8e-07 60.5 125 36.8
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.8e-07 60.5 126 42.1
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.3e-07 60.1 49 59.2
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.0e-07 59.7 130 36.2
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.0e-07 59.7 130 36.2
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-07 59.7 128 41.4
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-07 59.7 128 41.4
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.0e-07 59.7 118 33.1
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 3.0e-07 59.7 188 31.4
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 3.0e-07 59.7 126 37.3
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 3.0e-07 59.7 31 74.2
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.9e-07 59.3 123 34.1
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 3.9e-07 59.3 126 43.7
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.9e-07 59.3 121 37.2
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 5.1e-07 58.9 46 54.3
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 5.1e-07 58.9 31 74.2
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.1e-07 58.9 49 57.1
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.7e-07 58.5 30 76.7
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 6.7e-07 58.5 147 35.4
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 6.7e-07 58.5 114 35.1
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.7e-07 58.5 47 57.4
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.1e-06 57.8 33 72.7
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.1e-06 57.8 49 57.1
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.5e-06 57.4 121 37.2
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.5e-06 57.4 42 61.9
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.5e-06 57.4 114 39.5
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.9e-06 57.0 35 68.6
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 2.5e-06 56.6 156 29.5
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.5e-06 56.6 148 31.1
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.5e-06 56.6 140 38.6
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 4.3e-06 55.8 152 29.6
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 4.3e-06 55.8 29 75.9
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.6e-06 55.5 108 36.1
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.6e-06 55.5 42 61.9
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.6e-06 55.5 33 69.7
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 7.4e-06 55.1 178 32.0
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 7.4e-06 55.1 114 35.1
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 7.4e-06 55.1 122 36.1
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 7.4e-06 55.1 125 33.6
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 9.6e-06 54.7 187 27.3
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 9.6e-06 54.7 32 71.9
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 9.6e-06 54.7 120 35.8
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 9.6e-06 54.7 190 27.9
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 9.6e-06 54.7 146 31.5


User provided reference genes

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