Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 0.0e+00 1086.6 538 100.0
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 3.6e-302 1040.8 538 95.9
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 9.3e-298 1026.2 539 94.8
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 1.2e-292 1009.2 541 93.0
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 2.0e-292 1008.4 541 92.8
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 2.6e-292 1008.1 541 92.8
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 5.6e-287 990.3 539 91.8
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 2.6e-284 981.5 544 90.6
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 5.8e-284 980.3 538 90.9
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 4.6e-281 970.7 544 90.1
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 1.3e-280 969.1 545 89.2
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 1.3e-270 936.0 544 85.1
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 1.7e-270 935.6 541 87.8
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 2.0e-263 912.1 542 84.1
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 3.1e-229 798.5 537 74.3
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 4.1e-229 798.1 540 73.7
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 5.4e-229 797.7 540 73.9
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 9.2e-229 797.0 564 71.5
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 2.7e-228 795.4 540 73.9
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 1.9e-226 789.3 539 72.9
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 1.6e-225 786.2 548 72.1
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 2.8e-225 785.4 541 72.8
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 1.0e-224 783.5 541 72.8
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 1.0e-224 783.5 539 73.1
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 1.4e-224 783.1 535 72.3
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 1.8e-224 782.7 541 73.2
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 6.8e-224 780.8 538 73.0
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 6.8e-224 780.8 540 73.1
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 2.6e-223 778.9 540 71.7
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 5.8e-223 777.7 540 72.0
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 8.3e-222 773.9 540 72.0
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 1.1e-221 773.5 547 72.2
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 3.2e-221 771.9 540 72.2
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 7.0e-221 770.8 539 71.2
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 2.7e-220 768.8 540 72.8
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 1.0e-219 766.9 540 72.2
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 3.0e-219 765.4 540 70.9
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 8.6e-219 763.8 543 71.6
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 1.1e-218 763.5 541 72.1
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 2.1e-217 759.2 527 72.5
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 2.0e-215 752.7 540 69.4
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 4.9e-214 748.0 544 69.1
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.1e-213 746.9 539 69.6
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 1.4e-213 746.5 536 71.1
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 4.1e-213 745.0 539 69.6
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 5.4e-213 744.6 623 63.4
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 7.0e-213 744.2 542 69.7
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 9.2e-213 743.8 542 69.2
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 2.1e-212 742.7 542 69.7
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 2.7e-212 742.3 540 69.1
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 6.0e-212 741.1 542 69.7
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 1.7e-211 739.6 542 69.7
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 5.1e-211 738.0 541 68.8
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 3.1e-208 728.8 539 68.5
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.8e-207 724.5 542 68.6
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 2.2e-206 722.6 541 69.3
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 6.4e-206 721.1 575 65.4
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 6.4e-206 721.1 540 68.1
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 2.4e-205 719.2 541 68.0
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 7.1e-205 717.6 540 67.4
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.2e-204 716.8 541 66.2
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 1.2e-204 716.8 491 72.1
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 4.6e-204 714.9 547 67.8
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 7.8e-204 714.1 537 66.9
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 2.3e-203 712.6 540 67.4
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 4.9e-198 694.9 542 65.7
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 5.4e-197 691.4 541 66.5
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 5.4e-197 691.4 538 63.9
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 3.0e-195 685.6 622 60.1
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 8.7e-195 684.1 558 62.4
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 5.3e-192 674.9 539 65.1
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 9.0e-192 674.1 465 72.5
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 7.6e-191 671.0 538 63.0
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 4.9e-190 668.3 538 62.5
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 3.3e-186 655.6 444 74.3
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 4.0e-184 648.7 584 58.4
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 4.0e-184 648.7 584 58.4
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 4.9e-182 641.7 477 69.4
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.4e-181 640.2 609 57.1
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 2.7e-180 636.0 494 65.2
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 4.3e-178 628.6 603 57.5
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 4.8e-177 625.2 448 71.0
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.3e-176 621.7 542 61.3
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 2.9e-174 615.9 494 63.8
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 3.3e-170 602.4 602 55.1
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 3.1e-168 595.9 463 66.7
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 5.1e-163 578.6 412 71.4
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 7.2e-157 558.1 539 55.7
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 1.2e-156 557.4 547 52.3
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 2.5e-154 549.7 540 54.1
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 7.4e-154 548.1 439 65.8
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 2.2e-145 520.0 492 56.9
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 3.7e-137 492.7 351 72.6
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 1.2e-132 477.6 346 69.4
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 1.2e-124 451.1 514 50.0
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 3.8e-118 429.5 882 33.6
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.9e-117 427.2 304 68.4
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.2e-116 424.5 844 34.2
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 8.0e-116 421.8 376 59.3
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 3.5e-111 406.4 889 31.9
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 1.5e-109 401.0 957 30.9
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 2.8e-108 396.7 969 31.2
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 6.2e-108 395.6 288 67.0
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 3.1e-107 393.3 309 65.0
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.6e-106 390.2 313 65.8
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 6.4e-105 385.6 237 81.9
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 9.8e-98 361.7 311 60.1
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 2.3e-94 350.5 244 69.7
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.2e-87 328.2 263 63.1
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 1.4e-75 288.1 196 74.5
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 1.6e-71 274.6 286 51.7
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.3e-70 271.6 289 53.3
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 2.8e-68 263.8 170 77.6
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 5.9e-34 149.8 129 62.0
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 5.1e-30 136.7 790 23.5
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 6.7e-30 136.3 106 65.1
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 7.2e-24 116.3 103 59.2
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 5.3e-19 100.1 107 55.1
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 5.5e-16 90.1 249 26.1
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 4.7e-15 87.0 244 27.9
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 8.3e-12 76.3 68 58.8
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 1.8e-11 75.1 62 66.1
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 6.5e-09 66.6 34 85.3
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 9.5e-08 62.8 71 42.3
SEGI_16502 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 1.0e-06 59.3 49 57.1
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.4e-06 58.9 43 69.8


User provided reference genes

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