Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 8.6e-108 395.2 201 100.0
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 4.0e-89 333.2 201 84.6
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 5.2e-89 332.8 201 84.6
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 6.4e-87 325.9 202 83.7
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 2.1e-82 310.8 201 78.6
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 2.8e-82 310.5 201 78.6
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 6.8e-81 305.8 201 77.1
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 6.8e-81 305.8 201 77.1
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 1.2e-80 305.1 201 77.6
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.5e-75 288.1 205 74.6
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 3.5e-69 266.9 201 68.7
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 1.8e-60 238.0 191 68.1
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 9.6e-51 205.7 197 53.8
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.4e-49 201.8 200 52.5
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 4.1e-49 200.3 200 52.0
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 5.3e-49 199.9 195 52.3
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 1.5e-48 198.4 198 53.5
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 2.6e-48 197.6 198 53.5
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 3.4e-48 197.2 197 51.8
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 5.9e-48 196.4 198 52.5
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 3.8e-47 193.7 197 51.3
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 5.0e-47 193.4 197 52.8
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 8.5e-47 192.6 191 50.3
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.9e-46 191.4 197 48.2
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 7.2e-46 189.5 200 49.0
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.2e-45 188.7 199 49.2
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 1.6e-45 188.3 201 49.8
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.1e-45 188.0 200 49.0
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 7.9e-45 186.0 198 48.5
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.0e-44 185.7 190 51.1
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 2.3e-44 184.5 197 50.3
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 3.0e-44 184.1 197 48.7
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 6.7e-44 183.0 199 48.7
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 8.7e-44 182.6 197 49.7
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 1.5e-43 181.8 202 45.0
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 5.7e-43 179.9 198 48.0
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 9.7e-43 179.1 203 46.8
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 9.7e-43 179.1 199 49.2
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 9.7e-43 179.1 201 48.8
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.3e-42 178.7 201 48.8
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.3e-42 178.7 203 46.8
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 2.2e-42 177.9 193 47.2
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.8e-42 177.6 189 48.7
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 6.3e-42 176.4 189 48.1
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.4e-41 175.3 189 48.1
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.4e-41 174.5 189 48.7
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 4.1e-41 173.7 195 46.2
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 4.1e-41 173.7 195 46.2
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 5.3e-41 173.3 189 48.7
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 6.9e-41 172.9 196 46.4
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.5e-40 171.8 179 48.6
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 4.5e-40 170.2 195 45.1
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 4.5e-40 170.2 194 44.8
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 1.3e-39 168.7 197 45.7
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.2e-39 167.9 197 48.2
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 2.9e-39 167.5 189 47.6
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 6.5e-39 166.4 196 48.0
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 8.5e-39 166.0 200 46.0
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 1.4e-38 165.2 200 46.0
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 2.5e-38 164.5 189 49.2
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 1.2e-37 162.2 196 41.8
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 1.2e-37 162.2 202 45.0
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 3.6e-37 160.6 205 43.4
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 8.8e-36 156.0 200 43.5
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.1e-35 155.6 199 41.7
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 6.9e-33 146.4 196 42.3
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.2e-31 141.4 82 80.5
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.2e-31 141.4 82 80.5
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 5.0e-31 140.2 150 46.7
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 8.8e-28 129.4 184 40.8
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 5.7e-27 126.7 197 36.0
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 4.8e-26 123.6 106 56.6
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 5.3e-25 120.2 169 40.8
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 9.1e-25 119.4 200 40.0
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 1.6e-24 118.6 195 35.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 5.9e-24 116.7 202 39.1
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 2.7e-21 107.8 198 36.4
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 1.4e-20 105.5 106 46.2
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 4.8e-18 97.1 137 38.7
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.6e-16 92.0 82 51.2
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.0e-15 89.4 82 51.2
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.3e-15 89.0 82 50.0
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 3.2e-14 84.3 190 30.5
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.2e-13 82.4 134 36.6
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 8.0e-13 79.7 187 31.0
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 1.4e-12 79.0 83 44.6
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.4e-11 74.3 186 29.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.4e-11 74.3 174 29.3
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 4.4e-11 73.9 82 37.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 5.7e-11 73.6 184 32.6
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 7.5e-11 73.2 187 30.5
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 9.8e-11 72.8 187 29.9
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 3.7e-10 70.9 192 30.2
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 4.8e-10 70.5 53 56.6
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 4.8e-10 70.5 160 30.0
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 4.8e-10 70.5 182 26.4
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 8.3e-10 69.7 182 26.9
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.1e-09 69.3 161 28.6
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.4e-09 68.9 187 29.4
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 2.4e-09 68.2 168 26.8
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 5.4e-09 67.0 113 30.1
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 5.4e-09 67.0 172 27.3
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.6e-08 65.5 163 24.5
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 2.0e-08 65.1 175 27.4
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.7e-08 64.7 113 30.1
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 3.5e-08 64.3 104 33.7
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 5.9e-08 63.5 158 29.7
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 5.9e-08 63.5 141 29.8
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 7.7e-08 63.2 196 25.0
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 7.7e-08 63.2 164 26.8
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.0e-07 62.8 177 28.2
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 1.3e-07 62.4 169 25.4
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.7e-07 62.0 121 30.6
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 1.7e-07 62.0 190 21.6
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 1.7e-07 62.0 190 21.6
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.3e-07 61.6 154 30.5
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 2.9e-07 61.2 175 26.9
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.9e-07 61.2 164 27.4
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 3.8e-07 60.8 104 30.8
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 5.0e-07 60.5 145 26.9
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 5.0e-07 60.5 174 25.9
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 6.5e-07 60.1 104 33.7
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 6.5e-07 60.1 122 30.3
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 6.5e-07 60.1 99 32.3
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.6e-07 59.7 127 27.6
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.6e-07 59.7 162 25.3
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 1.1e-06 59.3 93 37.6
MELO3C007346.2 Cucumis melo HOM05D000891 ORTHO05D000761 1.5e-06 58.9 104 30.8
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.9e-06 58.5 108 25.9
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.9e-06 58.5 164 25.6
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 1.9e-06 58.5 104 31.7
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 2.5e-06 58.2 175 26.3
PSO017G1775 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 95 31.6
PSO017G5032 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 96 31.2
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 3.2e-06 57.8 132 26.5
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 3.2e-06 57.8 132 26.5
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 3.2e-06 57.8 95 27.4
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 3.2e-06 57.8 166 24.7
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 4.2e-06 57.4 107 29.0
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.2e-06 57.4 160 26.9
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.2e-06 57.4 160 26.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 4.2e-06 57.4 185 24.3
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 4.2e-06 57.4 131 26.7
AUR62008921 Chenopodium quinoa HOM05D001779 ORTHO05D001753 5.5e-06 57.0 91 33.0
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 5.5e-06 57.0 107 29.0
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 5.5e-06 57.0 178 24.2
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 5.5e-06 57.0 125 34.4
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 5.5e-06 57.0 162 26.5
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 7.2e-06 56.6 127 24.4
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 7.2e-06 56.6 104 30.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 7.2e-06 56.6 104 34.6
AL3G20860 Arabidopsis lyrata HOM05D000855 ORTHO05D008530 9.5e-06 56.2 112 27.7
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 9.5e-06 56.2 158 24.7
Thhalv10020113m.g Eutrema salsugineum HOM05D000855 ORTHO05D008530 9.5e-06 56.2 112 28.6
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 9.5e-06 56.2 133 24.8
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 9.5e-06 56.2 133 24.8
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 9.5e-06 56.2 170 24.1
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 9.5e-06 56.2 114 27.2


User provided reference genes

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