Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1646.3 822 100.0
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1523.1 816 93.8
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1515.4 815 92.1
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1494.2 816 91.4
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1491.5 815 91.3
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1480.3 815 90.2
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1480.3 817 90.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1479.2 816 90.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1477.2 818 90.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1474.9 818 90.5
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1463.7 819 90.0
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1359.0 797 86.2
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 0.0e+00 1293.1 686 93.3
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1216.8 815 73.4
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1214.1 815 73.3
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 828 72.3
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1208.4 824 72.8
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 810 73.3
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1208.0 815 73.0
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 807 74.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1205.7 809 72.8
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1203.3 815 73.0
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1202.2 791 74.6
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 808 73.3
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 747 77.0
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 809 72.1
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 808 73.0
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 761 75.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1189.1 802 72.2
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 809 71.2
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 775 73.3
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 821 70.8
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1174.8 814 71.4
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 805 71.2
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1171.8 783 72.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 829 69.2
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1167.5 761 73.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 804 70.3
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1164.4 756 73.9
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 819 71.2
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1163.3 776 72.2
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 745 75.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1161.7 821 69.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1159.1 804 69.7
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 793 70.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1157.1 746 74.3
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1155.6 778 72.4
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1155.6 815 69.4
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1151.3 780 71.0
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1150.2 756 72.9
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1148.7 774 70.9
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1148.3 797 70.0
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1148.3 758 71.9
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1147.9 809 68.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1147.5 819 69.7
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 812 69.7
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1145.2 811 70.0
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1145.2 811 68.9
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 787 70.5
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 810 69.0
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 749 72.0
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 770 71.0
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1139.8 750 72.3
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 764 70.8
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1134.0 767 70.0
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1133.6 742 71.8
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1131.3 833 68.8
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1130.9 801 69.3
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1130.2 774 70.7
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1127.1 797 67.8
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1125.9 776 71.4
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 746 71.6
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1122.1 810 68.5
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1114.4 822 67.9
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1112.8 793 68.5
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1110.9 812 68.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1109.4 816 66.7
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1096.3 772 68.7
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1082.4 863 62.9
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 6.7e-311 1070.5 777 68.7
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 1.4e-308 1062.8 784 66.3
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 8.3e-306 1053.5 699 72.0
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 2.7e-304 1048.5 664 75.2
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 2.3e-303 1045.4 836 63.6
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 2.8e-301 1038.5 687 72.9
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 4.9e-298 1027.7 695 70.2
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 1.1e-297 1026.5 809 64.8
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 8.6e-295 1016.9 685 71.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 8.1e-293 1010.4 758 66.5
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 6.0e-288 994.2 738 65.6
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.9e-286 989.2 881 58.9
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.5e-275 953.0 756 60.6
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.7e-274 949.5 625 73.4
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 6.4e-274 947.6 754 59.3
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.1e-268 930.2 752 58.5
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.8e-250 868.6 607 69.0
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.3e-247 860.1 635 65.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 5.1e-231 805.1 623 62.0
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 5.0e-226 788.5 688 59.3
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-213 746.9 677 53.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 7.2e-201 704.9 523 64.4
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 7.1e-172 608.6 783 43.2
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 5.6e-145 519.2 351 67.5
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.7e-133 481.1 595 47.1
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.1e-119 435.3 346 63.0
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 7.2e-92 342.8 264 63.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.9e-82 309.3 286 57.7
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-73 282.3 223 61.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.6e-70 270.4 254 55.5
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.5e-57 228.8 150 72.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 6.0e-46 190.3 122 73.8
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.5e-38 164.5 123 65.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 5.1e-37 160.6 138 56.5
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 5.1e-37 160.6 105 71.4
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.2e-25 122.9 94 60.6
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 2.5e-23 115.2 157 41.4
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.3e-19 102.8 107 43.9
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.5e-17 95.9 114 51.8
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 6.5e-16 90.5 62 69.4
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.9e-15 89.0 56 78.6
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 4.3e-12 77.8 47 74.5
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.8e-11 75.1 43 72.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.4e-10 72.0 58 65.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 6.9e-10 70.5 87 50.6
A03p30560 Brassica napus HOM05D000161 ORTHO05D042129 1.7e-08 65.9 53 69.8
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 6.5e-08 63.9 60 60.0
BraA03t12236Z Brassica rapa HOM05D000161 ORTHO05D042129 4.6e-06 57.8 38 78.9


User provided reference genes

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