Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 6.8e-190 667.2 332 100.0
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 6.3e-180 634.0 332 95.2
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 8.3e-180 633.6 332 95.2
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.7e-178 628.6 328 94.2
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.5e-178 628.2 331 94.6
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 3.5e-178 628.2 332 94.6
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 1.5e-176 622.9 334 93.7
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 5.6e-176 620.9 328 94.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 9.5e-176 620.2 325 95.4
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.6e-175 619.4 328 94.8
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 2.6e-165 585.5 322 89.1
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.7e-164 582.8 361 81.4
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 2.3e-153 545.8 331 78.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.3e-150 535.8 326 79.1
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.2e-149 533.5 326 78.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 4.4e-149 531.6 323 80.5
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 7.6e-149 530.8 328 78.7
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 9.9e-149 530.4 327 79.2
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.3e-148 530.0 326 78.5
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.7e-148 529.6 325 77.8
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.8e-148 528.5 325 79.7
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 4.9e-148 528.1 327 77.4
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 4.9e-148 528.1 325 79.1
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.1e-147 526.9 329 77.8
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 2.4e-147 525.8 330 77.0
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 4.1e-147 525.0 323 78.6
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 5.4e-147 524.6 323 77.7
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 5.4e-147 524.6 321 79.1
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 7.1e-147 524.2 324 78.1
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 7.1e-147 524.2 319 78.7
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 2.1e-146 522.7 319 79.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.1e-146 522.7 326 78.2
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 4.6e-146 521.5 319 79.6
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 7.8e-146 520.8 321 78.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 7.8e-146 520.8 355 73.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 7.8e-146 520.8 324 78.4
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.0e-145 520.4 320 79.1
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.7e-145 519.6 323 78.0
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.3e-145 519.2 325 76.9
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 3.0e-145 518.8 323 78.9
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 3.0e-145 518.8 320 77.5
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.9e-145 518.5 318 77.7
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.1e-145 518.1 322 76.7
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.5e-144 516.5 327 76.1
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.9e-144 516.2 323 76.8
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.5e-144 515.8 325 78.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 3.3e-144 515.4 321 77.6
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 5.6e-144 514.6 322 76.7
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 9.6e-144 513.8 319 77.4
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 1.2e-143 513.5 325 77.5
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.2e-143 513.5 325 77.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.2e-143 513.5 322 76.1
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 2.8e-143 512.3 323 76.8
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 3.6e-143 511.9 323 76.5
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 3.6e-143 511.9 324 75.6
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 6.2e-143 511.1 325 77.2
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 6.2e-143 511.1 322 76.4
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.1e-142 510.4 325 76.9
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-142 510.4 322 76.7
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.4e-142 510.0 326 75.8
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.8e-142 509.6 320 76.9
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.8e-142 509.6 326 75.8
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 2.4e-142 509.2 317 77.9
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.4e-142 509.2 326 75.8
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.0e-142 508.4 324 76.5
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.2e-141 506.9 319 75.5
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.5e-141 506.5 317 77.9
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.0e-141 506.1 321 75.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.0e-141 506.1 321 75.4
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.0e-141 506.1 317 77.0
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 3.4e-141 505.4 319 75.5
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 4.4e-141 505.0 317 77.9
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 5.8e-141 504.6 323 75.9
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 9.9e-141 503.8 317 77.6
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.8e-140 501.9 328 74.1
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.8e-140 501.9 320 76.2
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-139 500.4 322 74.2
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.1e-139 500.4 325 73.5
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.4e-139 499.2 321 74.5
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 5.4e-139 498.0 324 75.0
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.1e-138 496.1 324 74.1
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.0e-138 494.6 306 78.1
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 6.0e-138 494.6 321 73.8
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 6.6e-137 491.1 322 73.3
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 4.3e-136 488.4 325 71.4
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 7.3e-136 487.6 319 73.7
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 9.6e-136 487.3 325 73.2
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.1e-135 486.1 325 72.9
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 3.4e-133 478.8 327 73.1
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 8.4e-132 474.2 319 70.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 6.0e-130 468.0 328 70.4
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 7.9e-130 467.6 290 79.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.3e-129 466.8 293 77.8
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 3.0e-129 465.7 292 78.1
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.5e-128 462.6 295 75.3
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.5e-125 451.8 289 76.1
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 7.6e-125 451.1 320 69.1
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 9.9e-125 450.7 289 75.8
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 1.1e-123 447.2 320 72.2
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.5e-120 436.8 256 80.5
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.4e-120 434.5 254 80.7
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.1e-118 429.1 254 79.9
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 2.6e-117 426.0 344 64.5
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 5.5e-115 418.3 327 65.1
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.3e-112 408.7 256 77.0
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.4e-110 402.9 273 73.3
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.1e-106 389.8 256 74.2
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 8.2e-103 377.9 324 59.3
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 3.4e-101 372.5 326 57.4
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.7e-100 370.2 222 80.6
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.7e-100 370.2 330 56.4
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.6e-98 362.5 226 76.1
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.2e-82 310.8 306 52.6
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.3e-78 295.4 168 85.1
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 4.5e-77 292.4 205 66.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 6.8e-73 278.5 278 57.2
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.8e-71 272.3 176 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.7e-60 237.3 205 57.1
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.1e-59 234.6 147 75.5
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 8.6e-52 208.4 213 54.5
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 8.0e-50 201.8 317 36.3
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 9.2e-46 188.3 195 52.8
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 3.5e-45 186.4 316 40.8
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 4.0e-41 172.9 344 33.1
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.9e-38 164.1 237 39.2
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.7e-37 160.2 106 71.7
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 7.3e-35 152.1 114 65.8
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 6.2e-34 149.1 242 45.9
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.5e-32 144.4 321 34.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 2.1e-21 107.5 57 89.5
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 2.0e-16 90.9 250 31.2
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 1.4e-14 84.7 98 46.9
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 4.6e-13 79.7 45 80.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.0e-12 77.0 69 59.4
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 8.1e-10 68.9 78 47.4
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.9e-06 57.8 41 75.6
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 4.2e-06 56.6 30 80.0


User provided reference genes

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