Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.1e-282 973.8 498 100.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.3e-258 896.0 498 90.6
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 6.2e-256 887.1 498 90.0
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 6.2e-256 887.1 517 88.0
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.8e-255 885.6 498 89.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.2e-252 874.4 498 89.4
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-251 872.8 488 91.0
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 2.1e-251 872.1 518 86.3
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.5e-246 854.4 498 87.3
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.9e-244 849.0 498 87.8
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.9e-244 849.0 498 86.9
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.9e-244 849.0 498 87.6
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.5e-220 769.6 504 80.4
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.7e-214 747.3 508 76.4
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.9e-213 745.3 504 76.4
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 8.5e-213 743.8 517 75.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.5e-212 743.0 517 75.2
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.5e-209 733.0 504 75.2
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 3.4e-209 731.9 504 75.0
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 6.1e-203 711.1 530 71.9
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.2e-201 706.8 516 70.5
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.4e-201 705.3 518 71.6
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 8.3e-200 700.7 519 71.7
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.8e-199 699.5 516 68.8
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 5.4e-199 698.0 529 67.7
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 7.0e-199 697.6 519 71.5
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.7e-198 695.7 529 68.8
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 3.5e-198 695.3 516 68.6
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 1.7e-197 693.0 514 68.9
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 5.0e-197 691.4 519 71.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 5.0e-197 691.4 516 69.4
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.5e-196 689.9 519 71.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.6e-195 686.4 530 67.5
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.1e-195 686.0 514 68.9
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 2.1e-195 686.0 530 66.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.8e-195 685.6 516 68.0
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.0e-194 683.7 529 66.5
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.0e-194 683.7 529 66.5
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.8e-194 682.9 514 69.1
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 2.3e-194 682.6 515 68.0
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.3e-194 682.6 521 67.9
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.0e-194 682.2 516 66.5
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 3.0e-194 682.2 515 69.1
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.2e-193 680.2 529 67.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 5.7e-193 677.9 505 71.5
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 7.5e-193 677.6 520 68.8
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 2.2e-192 676.0 514 67.5
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.2e-192 676.0 519 68.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.9e-192 675.6 515 68.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 2.9e-192 675.6 512 67.4
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 4.6e-190 668.3 526 65.2
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.0e-189 667.2 514 66.5
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.3e-189 666.8 523 66.2
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 3.9e-189 665.2 528 66.9
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 3.9e-189 665.2 517 65.8
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 3.9e-189 665.2 506 67.6
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.5e-188 663.3 516 65.9
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.5e-188 662.5 516 66.7
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.6e-187 659.8 518 65.6
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.8e-187 659.1 529 64.8
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 4.7e-187 658.3 510 65.9
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 4.7e-187 658.3 516 65.3
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 4.7e-187 658.3 566 62.2
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 6.2e-187 657.9 516 65.1
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 5.2e-186 654.8 518 66.4
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 8.9e-186 654.1 516 66.3
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.5e-185 653.3 513 66.7
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.6e-185 652.5 509 65.0
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.6e-185 652.5 513 66.5
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 3.4e-185 652.1 529 63.7
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 4.4e-185 651.7 515 65.4
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 5.8e-185 651.4 535 63.7
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.3e-184 650.2 499 67.3
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.7e-184 649.8 511 63.6
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.7e-184 649.8 527 65.3
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.9e-184 649.0 526 64.6
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 3.7e-184 648.7 508 65.9
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 8.3e-184 647.5 530 65.3
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 8.3e-184 647.5 521 63.3
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 2.4e-183 646.0 517 63.8
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.4e-183 646.0 529 64.3
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 4.1e-183 645.2 559 61.0
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.6e-182 643.3 513 65.7
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.0e-182 642.9 517 63.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.0e-182 641.3 511 63.4
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.6e-179 633.3 504 66.3
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.6e-179 633.3 499 65.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.1e-175 620.5 463 68.5
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 7.1e-175 617.8 540 61.5
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.5e-172 610.1 507 61.3
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 6.8e-170 601.3 488 65.6
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 8.9e-170 600.9 503 63.0
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 7.6e-169 597.8 525 60.0
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.1e-167 594.0 507 63.1
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 9.2e-167 590.9 502 62.0
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.7e-165 586.6 510 61.2
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.8e-163 579.3 548 56.9
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.1e-162 575.9 509 57.8
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 8.9e-162 574.3 518 60.2
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.0e-157 560.8 433 66.5
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.7e-157 560.1 509 57.8
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 3.3e-156 555.8 526 57.6
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 5.3e-154 548.5 521 54.3
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.5e-153 547.0 438 64.6
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 4.2e-151 538.9 516 57.2
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 7.9e-150 534.6 513 57.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.0e-149 534.3 437 62.5
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 2.6e-145 519.6 463 60.3
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.9e-144 516.2 491 56.0
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.0e-129 466.8 445 57.5
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 9.0e-122 441.4 356 65.2
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 8.8e-117 424.9 387 59.4
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.5e-116 424.1 513 47.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 9.7e-116 421.4 526 46.8
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.5e-113 414.1 495 44.6
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 6.1e-110 402.1 386 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 4.5e-97 359.4 470 43.8
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 6.1e-86 322.4 470 42.8
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.6e-49 201.4 139 74.1
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 8.6e-48 195.7 137 78.1
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 5.8e-44 183.0 434 35.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 2.1e-41 174.5 123 68.3
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 8.7e-32 142.5 98 78.6
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.9e-31 141.4 268 38.1
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.3e-22 112.1 78 67.9
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 4.8e-22 110.2 71 71.8
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-21 107.1 143 35.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.9e-21 106.3 115 59.1
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.4e-20 104.0 79 65.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.4e-18 98.6 102 52.9
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 7.9e-17 92.8 72 68.1
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 8.2e-14 82.8 237 27.4
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 2.2e-11 74.7 45 80.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-09 67.8 53 52.8
BolC6t40376H Brassica oleracea HOM05D005650 ORTHO05D040396 2.8e-06 57.8 32 81.2


User provided reference genes

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