Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 0.0e+00 1637.9 823 100.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 0.0e+00 1439.5 821 89.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1431.4 845 87.5
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1416.7 819 88.3
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 0.0e+00 1414.4 819 88.0
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 0.0e+00 1411.4 821 87.0
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 0.0e+00 1388.2 827 85.7
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 0.0e+00 1367.4 827 82.6
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 0.0e+00 1221.5 805 80.0
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 0.0e+00 1196.0 698 88.5
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 0.0e+00 1098.2 770 73.5
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 5.4e-305 1050.8 660 81.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.4e-289 999.6 613 82.7
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 2.8e-285 985.3 846 61.7
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 5.8e-275 951.0 829 59.0
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 9.3e-265 917.1 740 69.6
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.4e-260 902.5 821 56.6
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.3e-258 896.7 805 57.9
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 7.4e-254 880.9 766 59.1
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.4e-252 875.9 767 58.4
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.2e-250 869.4 805 56.0
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-249 866.7 493 89.7
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 3.3e-246 855.5 789 56.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 3.6e-240 835.5 782 55.4
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.3e-239 832.8 785 55.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.7e-237 826.6 742 58.1
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 7.7e-235 817.8 790 54.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.5e-234 814.3 782 54.3
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.9e-233 813.1 822 53.5
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 4.2e-233 812.0 786 53.7
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.4e-231 807.0 880 51.6
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.1e-230 803.9 827 52.7
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 8.2e-229 797.7 764 54.6
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.8e-228 796.6 837 51.9
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 6.1e-224 781.6 793 53.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.2e-221 773.1 789 52.9
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 5.9e-219 765.0 822 51.2
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 5.9e-219 765.0 759 53.5
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.0e-218 764.2 760 53.7
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 8.5e-218 761.1 792 52.4
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 8.5e-218 761.1 770 52.6
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 4.2e-217 758.8 780 50.5
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 7.2e-217 758.1 766 53.0
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.2e-216 757.3 854 49.5
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 8.0e-216 754.6 794 52.0
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.5e-214 750.4 811 50.7
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.0e-214 750.0 796 51.3
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 7.5e-214 748.0 794 51.1
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 4.8e-213 745.3 897 47.3
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.8e-212 743.4 772 51.9
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 9.1e-212 741.1 759 52.4
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.0e-211 740.0 755 53.1
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 5.9e-211 738.4 837 50.4
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 7.7e-211 738.0 777 51.0
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.8e-210 735.7 768 50.4
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 3.8e-210 735.7 792 50.9
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.9e-209 733.4 774 52.3
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 6.1e-208 728.4 774 51.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 6.8e-207 724.9 779 50.7
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 2.2e-205 719.9 771 50.3
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.9e-203 711.8 772 51.0
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.9e-201 706.8 769 50.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 7.3e-201 704.9 808 48.5
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 2.2e-197 693.3 761 48.6
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 3.2e-196 689.5 754 49.1
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 3.5e-195 686.0 771 47.6
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.9e-195 685.3 764 49.2
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 5.9e-195 685.3 764 49.2
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 5.6e-193 678.7 738 49.3
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.6e-192 677.2 788 47.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.2e-190 671.0 733 50.1
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.6e-190 669.8 721 50.9
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 4.9e-189 665.6 762 47.5
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.4e-188 664.1 843 44.4
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 5.4e-188 662.1 863 45.0
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.4e-188 662.1 622 56.6
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.2e-184 651.0 836 45.0
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 6.2e-184 648.7 758 46.0
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.4e-183 647.5 814 45.5
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.4e-183 647.5 792 46.5
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.9e-180 637.1 794 45.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.1e-180 636.0 806 44.7
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.1e-176 623.6 893 41.2
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.2e-174 617.8 774 46.6
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 2.6e-174 616.7 779 42.4
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.6e-171 607.4 638 52.2
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 4.6e-171 605.9 553 56.8
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.5e-169 600.1 764 44.2
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 4.4e-166 589.3 816 42.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 2.2e-165 587.0 825 43.9
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 7.8e-163 578.6 613 50.9
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.1e-160 570.5 816 41.8
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.3e-154 551.2 625 48.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 4.2e-148 529.6 602 47.3
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.3e-138 498.0 791 37.5
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-134 485.0 268 91.4
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.6e-123 446.8 537 46.0
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 6.7e-122 442.6 627 41.6
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.2e-120 437.6 561 43.3
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.6e-107 394.8 355 57.5
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 5.2e-66 256.9 545 33.4
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-63 248.4 371 41.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 2.4e-63 248.1 338 44.1
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 8.9e-58 229.6 214 54.2
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 4.6e-54 217.2 117 89.7
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 4.4e-49 200.7 170 60.6
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 1.2e-41 176.0 767 23.5
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.7e-38 164.9 627 24.2
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.0e-37 162.9 456 27.2
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.5e-36 159.1 168 51.8
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 7.4e-36 156.8 599 23.7
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.1e-34 152.9 154 52.6
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 3.4e-33 147.9 737 22.7
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 9.9e-33 146.4 144 51.4
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 9.9e-33 146.4 144 51.4
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 4.2e-31 141.0 78 88.5
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 9.6e-28 129.8 147 46.9
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 9.6e-28 129.8 147 46.9
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 4.6e-22 110.9 81 75.3
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.0e-21 109.8 117 43.6
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 5.9e-17 94.0 112 46.4
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 9.3e-15 86.7 105 45.7
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.5e-12 79.3 78 51.3
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.1e-10 71.2 440 21.8
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-09 67.8 624 21.2
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 5.9e-09 67.4 439 20.3
SGA_v2.0_scaffold4G02350 Striga asiatica HOM05D000001 ORTHO05D000003 1.7e-08 65.9 374 21.9
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 2.2e-08 65.5 92 40.2
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 2.9e-08 65.1 442 19.9
SGA_v2.0_scaffold47G17794 Striga asiatica HOM05D000001 ORTHO05D000003 3.8e-08 64.7 401 22.7
AagrBONN_evm.TU.Sc2ySwM_117.1086 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.5e-08 63.5 418 20.3
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 3.2e-07 61.6 396 21.0
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 4.2e-07 61.2 59 44.1
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 5.5e-07 60.8 385 21.0
AagrBONN_evm.TU.Sc2ySwM_369.151 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.4e-07 60.1 385 17.4
Lsat_1_v5_gn_5_86001 Lactuca sativa HOM05D005833 ORTHO05D011576 9.4e-07 60.1 57 45.6
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 1.2e-06 59.7 65 43.1
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 1.2e-06 59.7 58 44.8
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.2e-06 59.7 397 21.7
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 57 45.6
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 1.6e-06 59.3 76 35.5
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.6e-06 59.3 377 20.4
SGA_v2.0_scaffold47G17786 Striga asiatica HOM05D000001 ORTHO05D000003 2.1e-06 58.9 401 21.9
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 2.7e-06 58.5 88 35.2
Lsat_1_v5_gn_4_21621 Lactuca sativa HOM05D000942 ORTHO05D011576 2.7e-06 58.5 57 43.9
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 2.7e-06 58.5 54 46.3
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 371 20.2
AagrBONN_evm.TU.Sc2ySwM_228.4746 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 163 25.8
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 3.6e-06 58.2 104 31.7
Atru.chr3.3954 Acer truncatum HOM05D000001 ORTHO05D010418 4.7e-06 57.8 495 19.2
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 4.7e-06 57.8 54 44.4
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 4.7e-06 57.8 54 44.4
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 4.7e-06 57.8 59 42.4
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 4.7e-06 57.8 54 44.4
CDE04G0987 Ceratophyllum demersum HOM05D000001 ORTHO05D009429 6.1e-06 57.4 150 24.0
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 6.1e-06 57.4 55 43.6
Lsat_1_v5_gn_0_17581 Lactuca sativa HOM05D000524 ORTHO05D011576 7.9e-06 57.0 51 45.1
Lsat_1_v5_gn_1_92720 Lactuca sativa HOM05D001336 ORTHO05D011576 7.9e-06 57.0 71 38.0
Lsat_1_v5_gn_4_20761 Lactuca sativa HOM05D002313 ORTHO05D014289 7.9e-06 57.0 54 44.4
Manes.14G112800 Manihot esculenta HOM05D006258 ORTHO05D007961 7.9e-06 57.0 229 18.8


User provided reference genes

Program Settings