Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 5.2e-85 317.8 170 100.0
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 3.2e-71 271.9 172 84.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 1.4e-69 266.5 172 82.6
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-69 265.8 170 81.8
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-68 263.5 171 82.5
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-68 263.1 171 81.9
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.5e-68 263.1 172 82.0
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.6e-68 262.3 171 81.9
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.6e-68 262.3 171 81.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.6e-68 262.3 171 81.9
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 3.7e-67 258.5 172 84.3
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 7.0e-66 254.2 170 80.6
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 9.1e-66 253.8 170 79.4
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.0e-65 252.7 170 78.2
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.7e-65 252.3 170 78.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.5e-65 251.5 170 78.8
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 79.4
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 79.4
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 5.9e-65 251.1 170 79.4
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.3e-64 250.0 170 77.6
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 8.5e-64 247.3 170 78.2
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 8.5e-64 247.3 170 79.4
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 8.5e-64 247.3 170 78.2
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.5e-63 246.5 170 78.8
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-63 246.5 170 78.8
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-63 246.1 170 77.1
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.9e-63 246.1 170 77.1
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.5e-63 245.7 168 78.0
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.5e-63 245.7 170 77.6
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-63 245.7 170 77.6
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.5e-63 245.7 170 77.6
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-63 245.4 170 78.2
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 5.5e-63 244.6 170 76.5
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 7.2e-63 244.2 170 76.5
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 7.2e-63 244.2 170 76.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.8e-61 239.6 167 76.0
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 5.2e-61 238.0 170 72.4
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 5.2e-61 238.0 171 74.9
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.4e-60 235.3 173 73.4
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 72.4
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 2.0e-57 226.1 170 71.8
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 70.6
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.7e-57 225.7 170 71.2
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 3.5e-57 225.3 170 71.2
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.3e-56 222.6 170 69.4
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.9e-56 222.2 171 68.4
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 6.6e-56 221.1 171 70.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 8.6e-56 220.7 171 67.8
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 67.3
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 69.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.1e-55 220.3 170 69.4
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.5e-55 219.9 170 68.2
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.5e-55 219.9 170 68.8
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.5e-55 219.9 170 69.4
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 2.5e-55 219.2 170 69.4
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.5e-55 219.2 170 68.2
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 2.5e-55 219.2 170 69.4
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 3.3e-55 218.8 170 67.6
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 4.3e-55 218.4 170 67.6
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 4.3e-55 218.4 170 67.6
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.3e-55 218.4 170 67.6
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.6e-55 218.0 170 67.6
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 5.6e-55 218.0 169 68.0
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 9.5e-55 217.2 170 67.1
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 67.1
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 67.6
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 67.6
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.6e-54 216.5 170 65.9
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.8e-54 215.7 170 67.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 2.8e-54 215.7 170 65.9
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 65.3
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 65.3
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 4.7e-54 214.9 170 64.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 6.1e-54 214.5 171 67.3
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 6.1e-54 214.5 170 66.5
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 8.0e-54 214.2 170 66.5
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 65.9
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 67.1
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 67.1
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.4e-53 213.4 170 65.3
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 1.4e-53 213.4 170 67.6
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.8e-53 213.0 170 66.5
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 3.0e-53 212.2 173 65.9
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 64.1
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 65.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 4.0e-53 211.8 170 64.1
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 4.0e-53 211.8 170 65.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 5.2e-53 211.5 170 64.7
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 6.8e-53 211.1 170 65.3
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 6.8e-53 211.1 170 65.3
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 8.9e-53 210.7 167 68.9
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 8.9e-53 210.7 162 68.5
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.2e-52 210.3 170 67.1
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.5e-52 209.9 170 65.9
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.5e-52 209.9 170 64.7
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 63.5
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.0e-52 209.5 170 65.3
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.6e-52 209.1 171 64.9
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 5.7e-52 208.0 171 66.1
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 5.7e-52 208.0 170 61.8
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 7.5e-52 207.6 171 66.1
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 7.5e-52 207.6 170 63.5
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 9.8e-52 207.2 170 66.5
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 9.8e-52 207.2 171 66.7
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 1.3e-51 206.8 170 65.9
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.7e-51 206.5 170 64.7
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.2e-51 206.1 170 64.7
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 3.7e-51 205.3 170 65.9
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 4.9e-51 204.9 171 65.5
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 6.4e-51 204.5 171 64.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.3e-51 204.1 168 63.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.4e-50 203.4 170 61.2
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.8e-50 203.0 167 65.3
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 2.4e-50 202.6 170 65.9
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.0e-50 201.1 170 64.7
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 7.0e-50 201.1 166 62.7
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.6e-49 199.9 172 65.7
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.0e-49 199.5 166 62.7
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.0e-49 199.5 156 69.2
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 2.7e-49 199.1 170 61.8
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 2.7e-49 199.1 170 62.9
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 3.5e-49 198.7 170 64.1
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.7e-48 196.4 166 63.3
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.3e-48 196.1 159 64.2
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.3e-48 196.1 173 62.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.1e-47 193.7 170 62.9
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.3e-47 191.8 162 61.1
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 4.3e-47 191.8 171 63.7
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 4.3e-47 191.8 170 61.8
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 5.6e-47 191.4 163 65.0
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.2e-46 190.3 171 63.2
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 8.0e-46 187.6 171 60.2
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 8.0e-46 187.6 170 60.0
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 2.3e-45 186.0 171 59.6
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 2.3e-45 186.0 171 59.6
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 5.2e-45 184.9 169 59.8
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 2.9e-43 179.1 171 57.9
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.0e-41 172.9 102 77.5
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.0e-40 170.6 171 58.5
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.3e-40 170.2 102 76.5
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 1.7e-40 169.9 149 65.1
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 2.5e-39 166.0 172 57.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.2e-38 163.7 171 57.9
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 3.6e-38 162.2 99 74.7
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 4.0e-37 158.7 100 73.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 5.2e-37 158.3 161 54.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.7e-35 152.1 120 64.2
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.1e-31 140.6 217 42.9
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.2e-30 137.1 172 44.2
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.1e-30 136.3 177 46.3
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 8.1e-30 134.4 175 44.6
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 9.9e-28 127.5 148 50.0
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.9e-28 127.5 172 41.9
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 1.7e-27 126.7 175 40.6
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 3.2e-26 122.5 116 52.6
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 7.1e-26 121.3 146 47.9
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.7e-25 119.4 70 77.1
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 3.5e-25 119.0 172 45.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-24 116.7 70 75.7
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 6.6e-24 114.8 171 45.6
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-19 100.1 67 71.6
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.4e-18 97.1 179 40.8
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.7e-16 87.8 67 61.2
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.1e-10 70.9 44 68.2


User provided reference genes

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