Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 2691.8 1385 100.0
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 2405.2 1394 89.3
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 2401.3 1392 89.1
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 2391.3 1392 88.4
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 2382.4 1392 88.4
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 2353.2 1403 87.2
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2350.1 1387 88.5
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 2346.2 1403 87.7
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 2313.5 1389 87.1
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2305.4 1390 87.1
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 2179.8 1412 82.5
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1972.6 1401 75.0
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1558.1 1409 61.2
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1547.3 1437 59.4
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1542.3 1445 58.8
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1530.0 1425 58.2
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1517.7 1442 56.9
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1513.0 1451 57.8
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1510.7 1430 59.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1500.3 1441 58.8
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1496.1 1415 58.7
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1489.2 1478 56.3
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1487.6 1460 57.7
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1484.2 1429 58.4
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1471.8 1424 57.5
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1471.4 1421 57.2
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1464.5 1444 56.6
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1461.8 1419 57.3
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1458.0 1440 56.4
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1455.7 1421 57.4
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1454.9 1429 57.3
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1449.1 1420 56.5
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1448.7 1501 54.0
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1446.8 1489 55.1
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1444.5 1496 55.2
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1441.8 1351 58.3
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1441.0 1422 56.6
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1441.0 1490 55.2
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1441.0 1380 57.0
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1440.6 1442 55.6
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1440.6 1442 55.6
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1439.5 1428 56.5
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1438.3 1490 55.2
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1432.9 1432 55.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1427.5 1437 56.3
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1425.6 1422 56.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1425.2 1420 54.9
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1423.7 1419 56.4
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1422.5 1546 53.0
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1421.8 1430 55.1
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1418.7 1424 56.1
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1416.0 1412 55.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1408.7 1418 54.7
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1408.7 1419 55.7
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1405.2 1496 54.4
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1378.6 1439 55.6
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1373.6 1444 53.9
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1359.4 1403 55.3
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1354.3 1291 56.8
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1352.4 1467 53.3
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1350.9 1010 65.2
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1350.9 1291 56.6
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1348.6 1303 55.6
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1346.3 1317 55.8
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1344.7 1263 56.1
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1340.1 1357 53.4
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1336.6 1020 64.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1333.9 1246 55.7
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1331.6 1379 53.3
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1328.2 1365 52.5
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1326.6 1232 56.5
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1323.5 1304 54.1
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1323.1 1406 54.7
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1322.4 1280 54.8
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1311.2 1517 48.6
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1270.4 1317 52.0
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1262.7 1311 53.1
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1255.0 1253 52.8
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1252.3 1437 50.9
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1241.1 1391 51.8
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1233.8 1031 59.6
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1228.0 1247 55.2
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1202.2 1279 52.2
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1186.0 1276 52.6
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1172.1 1275 50.6
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1161.4 1476 45.2
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1124.4 1249 50.8
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1112.4 850 63.2
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1110.1 1133 57.3
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1100.1 859 63.4
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1083.2 768 68.8
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 1.6e-309 1066.6 1449 45.8
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 4.2e-302 1042.0 768 66.7
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 1.2e-301 1040.4 863 61.1
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 1.1e-291 1007.3 1027 51.1
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.5e-288 995.3 1073 51.0
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.5e-283 980.3 1030 51.4
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.5e-246 857.4 1010 47.5
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 9.5e-246 854.7 838 56.6
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.3e-213 748.0 947 50.7
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 4.0e-212 743.0 481 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 3.9e-207 726.5 819 46.8
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.7e-184 650.6 798 51.8
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.2e-178 630.9 811 43.5
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.5e-169 601.7 490 62.7
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 5.9e-163 579.7 772 51.2
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 6.5e-162 576.2 772 51.2
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.7e-141 508.4 498 51.8
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 4.3e-137 493.8 324 70.7
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 2.3e-127 461.5 371 60.4
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 5.4e-108 397.1 500 49.6
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 2.3e-106 391.7 327 58.1
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 6.7e-98 363.6 235 74.5
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.8e-87 328.9 294 55.8
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 6.7e-82 310.5 206 72.8
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 5.3e-71 274.2 827 27.3
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 9.1e-71 273.5 228 61.4
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 1.3e-69 269.6 208 61.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.1e-67 262.3 173 68.8
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 6.3e-64 250.8 660 36.7
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 3.5e-62 245.0 524 38.0
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 6.5e-61 240.7 728 27.1
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 2.5e-60 238.8 816 25.2
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 2.4e-55 222.2 145 69.0
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 7.2e-52 210.7 154 70.1
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 5.4e-47 194.5 174 62.1
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-44 186.0 139 63.3
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 5.7e-41 174.5 115 69.6
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 1.3e-40 173.3 104 79.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 7.3e-36 157.5 451 36.8
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.2e-35 156.8 231 41.1
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.3e-34 152.5 139 52.5
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 8.9e-34 150.6 474 32.7
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 2.9e-32 145.6 156 54.5
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 8.3e-32 144.1 137 51.1
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 1.4e-31 143.3 687 23.1
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.8e-26 126.3 85 69.4
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 2.6e-25 122.5 105 58.1
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 7.5e-25 120.9 111 54.1
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.3e-24 117.5 158 44.9
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 1.1e-23 117.1 122 53.3
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-23 117.1 72 69.4
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 7.0e-23 114.4 79 70.9
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 2.0e-22 112.8 121 52.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 7.8e-22 110.9 81 61.7
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-20 106.7 75 68.0
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.8e-19 102.4 154 42.9
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 6.2e-19 101.3 69 68.1
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 8.1e-19 100.9 119 48.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.4e-18 100.1 119 45.4
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.5e-17 96.7 138 42.0
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.2e-16 92.8 62 71.0
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 5.1e-13 81.6 69 58.0
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 3.3e-12 79.0 113 38.9
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 3.3e-12 79.0 43 67.4
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 7.3e-12 77.8 188 37.8
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 3.1e-10 72.4 66 54.5
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.1e-10 72.4 71 42.3
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-09 70.5 87 49.4
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 2.6e-09 69.3 36 80.6
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.6e-09 69.3 48 70.8
Thhalv10002734m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 1.9e-07 63.2 44 72.7
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 4.1e-07 62.0 103 35.9
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 5.4e-07 61.6 339 20.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 9.2e-07 60.8 73 39.7
SGA_v2.0_scaffold20G09187 Striga asiatica HOM05D002132 ORTHO05D002168 1.2e-06 60.5 305 21.6
Pp3c19_6990 Physcomitrium patens HOM05D002132 ORTHO05D002168 1.6e-06 60.1 344 20.6
SalBow4G2233 Salvia bowleyana HOM05D002132 ORTHO05D002168 2.1e-06 59.7 342 21.1
unitig_0.g2556 Utricularia gibba HOM05D002132 ORTHO05D002168 7.8e-06 57.8 299 22.1


User provided reference genes

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