Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.2e-89 332.4 189 100.0
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.7e-68 261.9 188 79.3
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.7e-68 261.9 188 79.3
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-67 260.0 188 84.0
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 7.0e-67 257.7 188 83.0
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.0e-67 257.7 190 81.6
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.3e-65 252.7 188 81.9
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.0e-62 241.9 192 78.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 2.2e-60 236.1 176 80.7
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 7.0e-59 231.1 188 78.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.1e-58 229.6 177 80.2
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.0e-49 199.1 188 69.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.1e-47 191.0 179 61.5
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.5e-29 133.7 92 75.0
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.5e-29 133.7 93 73.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.5e-29 133.7 93 73.1
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.5e-29 132.1 93 73.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.7e-28 130.2 93 73.1
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.9e-28 129.4 182 46.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.8e-28 129.0 91 74.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.8e-28 129.0 93 72.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 4.9e-28 128.6 177 45.8
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.9e-28 128.6 155 52.3
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 6.4e-28 128.3 119 64.7
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 6.4e-28 128.3 93 68.8
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 2.4e-27 126.3 191 46.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.2e-27 125.6 125 59.2
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.4e-27 125.2 92 70.7
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 7.1e-27 124.8 175 45.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 7.1e-27 124.8 107 64.5
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.3e-27 124.4 89 71.9
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.2e-26 124.0 92 69.6
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.6e-26 123.6 93 69.9
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.1e-26 123.2 174 52.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.1e-26 123.2 93 69.9
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.7e-26 122.9 135 52.6
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.7e-26 122.9 93 68.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.5e-26 122.5 182 50.5
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.6e-26 122.1 182 50.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 4.6e-26 122.1 192 49.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.0e-25 119.4 101 62.4
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 3.9e-25 119.0 138 58.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.1e-25 118.6 93 62.4
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.7e-25 117.9 93 67.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.1e-24 117.5 128 57.0
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.9e-24 116.7 154 48.1
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.4e-24 114.8 160 50.0
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 9.6e-24 114.4 107 59.8
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 9.6e-24 114.4 183 48.6
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.6e-23 113.6 136 50.7
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.8e-23 112.8 183 49.2
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 7.6e-21 104.8 79 67.1
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.7e-20 103.6 150 46.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.6e-18 97.1 87 54.0
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.6e-18 97.1 87 56.3
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.7e-18 96.3 91 56.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.5e-18 95.9 85 56.5
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.5e-18 95.9 94 53.2
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.6e-18 95.5 89 56.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.6e-18 95.5 89 56.2
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.6e-18 95.5 89 56.2
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.6e-18 95.5 91 57.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.6e-18 95.5 87 52.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.6e-18 95.5 130 47.7
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 6.0e-18 95.1 91 53.8
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.0e-17 94.4 92 52.2
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.0e-17 94.4 87 54.0
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.3e-17 94.0 90 53.3
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-17 94.0 91 54.9
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-17 94.0 89 53.9
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.3e-17 94.0 89 53.9
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.3e-17 94.0 92 52.2
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.3e-17 94.0 89 53.9
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.8e-17 93.6 87 55.2
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 2.3e-17 93.2 92 52.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.3e-17 93.2 92 52.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-17 93.2 92 52.2
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.3e-17 93.2 90 53.3
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.3e-17 93.2 100 59.0
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.3e-17 93.2 87 54.0
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.3e-17 93.2 85 54.1
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.3e-17 93.2 179 41.9
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.0e-17 92.8 100 57.0
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.0e-17 92.8 91 51.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 54.4
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 54.4
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 54.4
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 54.4
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 53.3
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.9e-17 92.4 90 54.4
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 5.1e-17 92.0 87 52.9
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 6.7e-17 91.7 139 49.6
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 6.7e-17 91.7 156 47.4
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 6.7e-17 91.7 92 51.1
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 6.7e-17 91.7 92 51.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 8.7e-17 91.3 181 34.8
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 8.7e-17 91.3 87 52.9
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.1e-16 90.9 91 50.5
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-16 90.9 89 53.9
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.1e-16 90.9 85 52.9
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.1e-16 90.9 85 55.3
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.5e-16 90.5 87 51.7
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.9e-16 90.1 186 40.9
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.9e-16 90.1 157 45.2
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.5e-16 89.7 89 50.6
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.5e-16 89.7 89 50.6
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.3e-16 89.4 85 52.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.3e-16 89.4 91 48.4
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 3.3e-16 89.4 61 78.7
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.3e-16 89.0 197 42.6
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 4.3e-16 89.0 85 51.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 4.3e-16 89.0 87 51.7
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 4.3e-16 89.0 132 50.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 5.6e-16 88.6 87 52.9
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 7.4e-16 88.2 89 49.4
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 7.4e-16 88.2 91 49.5
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 7.4e-16 88.2 194 37.6
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 9.6e-16 87.8 89 51.7
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 9.6e-16 87.8 68 66.2
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.3e-15 87.4 89 51.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-15 87.4 147 44.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.6e-15 87.0 179 36.3
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.6e-15 87.0 89 49.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.1e-15 86.7 181 41.4
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.8e-15 86.3 199 38.7
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.8e-15 86.3 127 48.8
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.8e-15 85.5 187 43.9
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 6.2e-15 85.1 193 42.0
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.1e-14 84.3 174 42.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.1e-14 84.3 180 42.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.4e-14 83.2 90 50.0
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 5.3e-14 82.0 192 37.0
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.9e-14 81.6 173 40.5
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 9.0e-14 81.3 93 51.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-13 80.1 87 51.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 4.5e-13 79.0 85 47.1
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.2e-12 76.6 72 55.6
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.2e-12 76.6 56 66.1
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-12 76.3 170 40.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 8.4e-12 74.7 73 56.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.4e-11 73.9 57 63.2
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.5e-11 73.2 84 45.2
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 7.1e-11 71.6 69 53.6
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 6.1e-10 68.6 86 55.8
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 7.9e-10 68.2 131 35.1
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.0e-09 67.8 109 39.4
BcaC08g46443 Brassica carinata HOM05D004087 ORTHO05D004787 2.3e-09 66.6 35 88.6
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 3.0e-09 66.2 61 54.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 3.0e-09 66.2 71 47.9
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 6.7e-09 65.1 60 56.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.5e-08 63.9 59 54.2
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.9e-08 63.5 41 80.5
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 3.3e-08 62.8 60 58.3
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 9.7e-08 61.2 60 50.0
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.3e-07 60.8 39 79.5
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.2e-07 58.2 117 35.0
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 2.4e-06 56.6 117 32.5
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.4e-06 56.6 112 45.5
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.1e-06 55.8 111 44.1
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 5.3e-06 55.5 129 34.9


User provided reference genes

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