Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 0.0e+00 1126.3 559 100.0
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 9.0e-304 1046.2 558 92.3
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.3e-302 1042.3 558 92.1
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 3.8e-302 1040.8 558 91.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.0e-295 1018.5 558 90.7
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 5.7e-282 973.8 561 85.7
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.2e-278 961.8 559 85.0
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.9e-277 958.7 559 85.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.9e-277 958.7 560 85.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 5.2e-235 817.8 573 72.6
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 9.8e-234 813.5 558 76.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.1e-221 773.5 456 84.0
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.7e-193 679.9 561 62.2
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.5e-183 645.6 557 60.5
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 2.7e-175 619.4 417 76.0
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 4.7e-159 565.5 565 53.6
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 8.8e-150 534.6 570 51.2
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.6e-149 533.1 570 51.2
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 9.7e-149 531.2 570 50.9
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.3e-148 530.8 569 50.6
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.7e-148 530.4 578 50.0
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 5.3e-147 525.4 565 49.7
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 5.0e-145 518.8 571 49.7
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.5e-145 518.5 568 49.1
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-144 517.7 522 53.3
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.1e-143 513.5 577 49.6
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 8.0e-143 511.5 572 49.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.0e-142 511.1 570 49.3
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 5.2e-142 508.8 581 48.5
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.0e-141 506.9 578 48.8
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.4e-139 500.7 571 49.6
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 6.6e-137 491.9 560 47.3
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 4.2e-136 489.2 579 46.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.2e-136 489.2 570 47.5
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 2.8e-135 486.5 572 45.3
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 3.0e-134 483.0 576 45.0
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.6e-133 479.9 569 47.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.4e-133 479.6 577 44.5
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 7.5e-133 478.4 579 46.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.3e-132 477.6 593 46.4
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.7e-132 477.2 578 45.8
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.1e-131 474.6 576 45.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.8e-131 473.8 576 45.1
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.8e-131 473.8 576 45.1
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 5.4e-131 472.2 576 45.3
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 2.0e-130 470.3 568 44.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 2.0e-130 470.3 580 43.1
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.7e-130 469.9 532 48.5
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.7e-129 467.2 570 46.5
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 2.9e-129 466.5 570 46.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 6.6e-129 465.3 569 46.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 3.3e-128 463.0 572 46.3
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 4.3e-128 462.6 573 44.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.1e-127 460.3 626 42.8
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.1e-127 460.3 585 43.1
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 4.7e-127 459.1 567 45.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.0e-126 458.0 672 41.4
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.4e-126 457.6 572 42.7
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 2.3e-126 456.8 588 43.9
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 6.8e-126 455.3 550 46.2
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 5.8e-125 452.2 572 45.1
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.7e-124 450.7 578 42.6
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 3.2e-123 446.4 576 44.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.3e-121 440.3 569 42.7
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 3.0e-121 439.9 566 45.1
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 8.6e-121 438.3 632 41.9
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.5e-120 437.6 569 44.1
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.5e-120 437.6 601 41.3
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 7.3e-120 435.3 598 42.5
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 3.6e-119 433.0 572 43.0
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.6e-117 426.8 558 43.4
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.9e-116 423.3 572 44.8
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 1.4e-115 421.0 544 42.3
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.7e-113 414.1 566 40.5
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 3.0e-113 413.3 572 42.3
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 5.1e-113 412.5 567 42.5
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 4.4e-109 399.4 480 47.1
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 8.3e-108 395.2 609 39.4
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.8e-103 380.2 390 52.1
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.4e-102 377.9 611 39.0
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 5.4e-99 365.9 514 44.4
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.1e-96 358.2 549 40.1
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.9e-93 345.1 473 43.1
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 7.8e-90 335.5 555 40.0
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 9.6e-88 328.6 546 37.5
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 9.9e-85 318.5 414 43.5
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 4.9e-84 316.2 424 42.0
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 2.7e-82 310.5 303 51.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 6.7e-81 305.8 339 46.0
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.6e-80 302.0 503 39.4
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 4.8e-79 299.7 567 34.4
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.1e-78 298.5 333 47.4
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 9.0e-78 295.4 553 35.1
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.6e-74 284.6 409 39.4
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 7.9e-74 282.3 220 63.6
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 3.3e-72 276.9 603 35.0
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 9.6e-72 275.4 162 85.8
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.1e-70 271.9 269 49.8
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.5e-69 268.1 306 50.7
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 3.4e-69 266.9 389 39.1
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.9e-67 261.2 383 41.5
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.2e-63 247.7 396 37.4
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.9e-62 242.7 228 52.6
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 3.2e-59 233.8 397 40.3
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.8e-57 228.0 558 30.1
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.8e-54 218.0 280 41.8
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 6.9e-54 216.1 281 42.7
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 1.2e-53 215.3 198 59.6
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.1e-51 208.8 564 27.7
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 1.6e-50 204.9 286 40.2
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.4e-49 201.8 290 39.3
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 1.4e-49 201.8 284 40.5
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 2.0e-48 198.0 369 38.8
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 3.5e-45 187.2 157 61.1
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 2.9e-44 184.1 172 54.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.5e-43 181.0 173 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 8.0e-42 176.0 295 35.3
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 7.4e-40 169.5 563 26.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 4.1e-38 163.7 145 53.8
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 1.2e-34 152.1 167 49.7
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.6e-34 151.8 182 41.8
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.8e-33 148.3 268 40.3
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.3e-33 147.9 199 39.2
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.0e-32 144.8 126 57.9
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 8.3e-31 139.4 371 31.3
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 9.1e-30 136.0 152 44.7
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 2.9e-28 131.0 146 49.3
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 5.0e-28 130.2 91 63.7
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 2.7e-26 124.4 99 55.6
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 3.6e-26 124.0 79 68.4
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 1.7e-20 105.1 212 33.5
C02p22560 Brassica napus HOM05D002270 ORTHO05D002866 2.9e-20 104.4 61 83.6
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 6.1e-18 96.7 63 65.1
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.0e-17 95.9 204 32.4
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.9e-17 92.8 201 36.8
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.5e-16 92.0 150 36.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 2.0e-16 91.7 138 37.7
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.4e-16 90.9 126 38.9
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 7.5e-16 89.7 210 31.9
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.3e-15 89.0 124 38.7
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 1.3e-15 89.0 124 38.7
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.7e-15 88.6 152 34.9
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 2.9e-15 87.8 155 35.5
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 4.9e-15 87.0 148 35.1
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 5.4e-14 83.6 138 38.4
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 5.4e-14 83.6 148 33.8
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 7.8e-13 79.7 214 29.0
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-11 75.9 40 95.0
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.9e-11 75.1 167 32.9
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 7.3e-11 73.2 133 33.8
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 7.3e-11 73.2 128 30.5
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.2e-10 72.4 169 29.0
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.2e-10 72.4 124 33.9
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.6e-10 70.9 112 35.7
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 4.7e-10 70.5 176 29.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 4.7e-10 70.5 176 28.4
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.0e-09 69.3 124 33.1
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.4e-09 68.9 124 32.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 8.9e-09 66.2 143 31.5
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.9e-07 61.2 124 30.6


User provided reference genes

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