Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g18190 Schrenkiella parvula HOM05D000537 ORTHO05D372671 1.8e-123 446.0 240 100.0
Sp5g18050 Schrenkiella parvula HOM05D000537 ORTHO05D000415 2.3e-67 259.6 204 73.0
Sp5g18160 Schrenkiella parvula HOM05D000537 ORTHO05D000415 1.4e-56 223.8 142 76.8
Carub.0008s2006 Capsella rubella HOM05D000537 ORTHO05D000415 1.2e-23 114.4 192 38.5
CARHR285760 Cardamine hirsuta HOM05D000537 ORTHO05D000415 2.1e-23 113.6 130 46.2
Thhalv10013147m.g Eutrema salsugineum HOM05D000537 ORTHO05D000415 8.7e-22 108.2 197 36.5
AT5G59390 Arabidopsis thaliana HOM05D000537 ORTHO05D000415 3.3e-21 106.3 179 38.0
Sp6g21070 Schrenkiella parvula HOM05D000537 ORTHO05D000415 1.3e-20 104.4 131 45.0
AL8G35840 Arabidopsis lyrata HOM05D000537 ORTHO05D000415 1.7e-20 104.0 217 34.6
BcaB08g36262 Brassica carinata HOM05D000537 ORTHO05D000415 3.7e-20 102.8 228 31.6
AT4G01180 Arabidopsis thaliana HOM05D000537 ORTHO05D000415 1.2e-18 97.8 188 35.6
C09p51800 Brassica napus HOM05D000537 ORTHO05D000415 7.7e-18 95.1 228 30.7
BolC9t58041H Brassica oleracea HOM05D000537 ORTHO05D000415 7.7e-18 95.1 228 30.7
BcaC04g19779 Brassica carinata HOM05D000537 ORTHO05D000415 5.0e-17 92.4 228 30.3
A10p16590 Brassica napus HOM05D000537 ORTHO05D000415 8.5e-17 91.7 229 30.6
BraA10t43743Z Brassica rapa HOM05D000537 ORTHO05D000415 1.1e-16 91.3 168 35.1
CARHR038470 Cardamine hirsuta HOM05D000537 ORTHO05D000415 4.2e-16 89.4 227 32.2
ClCG03G001460 Citrullus lanatus HOM05D000537 ORTHO05D000415 1.3e-12 77.8 128 36.7
Sed0024690 Sechium edule HOM05D000537 ORTHO05D000415 1.8e-11 73.9 181 29.8
BcaB02g10057 Brassica carinata HOM05D000537 ORTHO05D000005 1.5e-10 70.9 90 42.2
MELO3C020627.2 Cucumis melo HOM05D000537 ORTHO05D000415 1.5e-10 70.9 149 30.9
QL05p058938 Quercus lobata HOM05D000537 ORTHO05D000415 2.6e-10 70.1 190 27.9
QL01p031634 Quercus lobata HOM05D000537 ORTHO05D000415 3.4e-10 69.7 179 30.2
Lj3g0006322 Lotus japonicus HOM05D000537 ORTHO05D000415 4.5e-10 69.3 201 28.4
Medtr4g131350 Medicago truncatula HOM05D000537 ORTHO05D000415 5.9e-10 68.9 184 29.9
Oeu021605.1 Olea europaea HOM05D000537 ORTHO05D000415 1.0e-09 68.2 186 27.4
Nitab4.5_0000272g0130 Nicotiana tabacum HOM05D000537 ORTHO05D000415 1.7e-09 67.4 181 29.8
CDE04G3239 Ceratophyllum demersum HOM05D000537 ORTHO05D000415 2.9e-09 66.6 136 34.6
CAN.G394.60 Capsicum annuum HOM05D000537 ORTHO05D000415 3.8e-09 66.2 172 30.8
Ciclev10030937m.g Citrus clementina HOM05D000537 ORTHO05D000415 3.8e-09 66.2 233 27.0
COL.COLO4_18521 Corchorus olitorius HOM05D000537 ORTHO05D000415 3.8e-09 66.2 133 30.8
Hma1.2p1_1542F.1_g289740 Hydrangea macrophylla HOM05D000537 ORTHO05D000415 5.0e-09 65.9 185 29.2
VMungo0647G2048 Vigna mungo HOM05D000537 ORTHO05D000415 5.0e-09 65.9 197 27.9
CDE03G0514 Ceratophyllum demersum HOM05D000537 ORTHO05D000415 6.5e-09 65.5 132 34.8
Prupe.3G097000 Prunus persica HOM05D000537 ORTHO05D000415 6.5e-09 65.5 180 28.3
Lsat_1_v5_gn_8_73981 Lactuca sativa HOM05D000537 ORTHO05D000415 8.5e-09 65.1 164 31.7
Medtr4g125920 Medicago truncatula HOM05D000537 ORTHO05D000415 8.5e-09 65.1 184 29.3
Nitab4.5_0011032g0020 Nicotiana tabacum HOM05D000537 ORTHO05D000415 8.5e-09 65.1 184 29.9
AT3G48670 Arabidopsis thaliana HOM05D000537 ORTHO05D000415 1.1e-08 64.7 183 29.5
TPR.G34301 Trifolium pratense HOM05D000537 ORTHO05D000415 1.1e-08 64.7 204 26.5
GSVIVG01024947001 Vitis vinifera HOM05D000537 ORTHO05D000415 1.1e-08 64.7 193 29.5
Nitab4.5_0000463g0200 Nicotiana tabacum HOM05D000537 ORTHO05D000415 1.4e-08 64.3 132 34.1
Solyc06g076200.2 Solanum lycopersicum HOM05D000537 ORTHO05D000415 1.4e-08 64.3 251 27.1
Carub.0005s1481 Capsella rubella HOM05D000537 ORTHO05D000415 1.9e-08 63.9 184 30.4
Phvul.010G160300 Phaseolus vulgaris HOM05D000537 ORTHO05D000415 1.9e-08 63.9 186 30.6
Hund13771 Selenicereus undatus HOM05D000537 ORTHO05D000415 1.9e-08 63.9 214 27.1
Sopen06g032620 Solanum pennellii HOM05D000537 ORTHO05D000415 1.9e-08 63.9 220 30.0
Psat7g259560 Pisum sativum HOM05D000537 ORTHO05D000415 2.5e-08 63.5 184 30.4
Rhsim01G0228500 Rhododendron simsii HOM05D000537 ORTHO05D000415 2.5e-08 63.5 169 29.6
arahy.Tifrunner.gnm1.ann1.1B9Y88 Arachis hypogaea HOM05D000537 ORTHO05D000415 3.2e-08 63.2 153 28.8
AUR62039367 Chenopodium quinoa HOM05D000537 ORTHO05D000415 3.2e-08 63.2 233 28.3
MD17G1222100 Malus domestica HOM05D000537 ORTHO05D000415 3.2e-08 63.2 184 27.7
Nn2g12312 Nelumbo nucifera HOM05D000537 ORTHO05D000415 3.2e-08 63.2 130 33.1
ECA233G6242 Erigeron canadensis HOM05D000537 ORTHO05D000415 5.5e-08 62.4 174 29.3
Solyc06g076210.3 Solanum lycopersicum HOM05D000537 ORTHO05D000415 5.5e-08 62.4 220 29.5
Sopen06g032600 Solanum pennellii HOM05D000537 ORTHO05D000415 5.5e-08 62.4 220 29.5
Sopen06g032640 Solanum pennellii HOM05D000537 ORTHO05D000415 5.5e-08 62.4 220 29.5
SGA_v2.0_scaffold58G20542 Striga asiatica HOM05D000537 ORTHO05D000415 5.5e-08 62.4 175 26.3
CiPaw.13G093400 Carya illinoinensis HOM05D000537 ORTHO05D000415 7.2e-08 62.0 123 33.3
BcaB01g00790 Brassica carinata HOM05D000537 ORTHO05D000415 9.4e-08 61.6 221 27.1
Cc01_g12950 Coffea canephora HOM05D000537 ORTHO05D000415 9.4e-08 61.6 127 30.7
Nitab4.5_0001326g0150 Nicotiana tabacum HOM05D000537 ORTHO05D000415 9.4e-08 61.6 174 29.9
BcaC07g39349 Brassica carinata HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
A06p19040 Brassica napus HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
C08p23670 Brassica napus HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
BolC8t49997H Brassica oleracea HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
BraA01t00719Z Brassica rapa HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
BraA06t24987Z Brassica rapa HOM05D000537 ORTHO05D000415 1.2e-07 61.2 229 26.6
Lalb_Chr17g0346241 Lupinus albus HOM05D000537 ORTHO05D000415 1.2e-07 61.2 216 26.4
Rhsim13G0174800 Rhododendron simsii HOM05D000537 ORTHO05D000415 1.2e-07 61.2 123 33.3
arahy.Tifrunner.gnm1.ann1.0692WS Arachis hypogaea HOM05D000537 ORTHO05D000415 1.6e-07 60.8 106 33.0
arahy.Tifrunner.gnm1.ann1.DNZ3MM Arachis hypogaea HOM05D000537 ORTHO05D000415 1.6e-07 60.8 153 28.1
arahy.Tifrunner.gnm1.ann1.S7J6Q0 Arachis hypogaea HOM05D000537 ORTHO05D000415 1.6e-07 60.8 106 33.0
CARHR157420 Cardamine hirsuta HOM05D000537 ORTHO05D000415 1.6e-07 60.8 125 32.0
Cpa.g.sc81.135 Carica papaya HOM05D000537 ORTHO05D000415 1.6e-07 60.8 168 28.0
AUR62012099 Chenopodium quinoa HOM05D000537 ORTHO05D000415 1.6e-07 60.8 231 27.3
HanXRQChr05g0134951 Helianthus annuus HOM05D000537 ORTHO05D000415 2.1e-07 60.5 164 29.3
Peaxi162Scf00774g00120 Petunia axillaris HOM05D000537 ORTHO05D000415 2.1e-07 60.5 213 26.8
SalBow6G5283 Salvia bowleyana HOM05D000537 ORTHO05D000415 2.1e-07 60.5 218 27.1
BcaC01g02354 Brassica carinata HOM05D000537 ORTHO05D000415 2.7e-07 60.1 221 26.7
C03p66190 Brassica napus HOM05D000537 ORTHO05D000415 2.7e-07 60.1 221 26.7
BolC3t18891H Brassica oleracea HOM05D000537 ORTHO05D000415 2.7e-07 60.1 221 26.7
CsaV3_1G034300 Cucumis sativus L. HOM05D000046 ORTHO05D000195 2.7e-07 60.1 128 29.7
Dinv26027 Davidia involucrata HOM05D000537 ORTHO05D000415 2.7e-07 60.1 143 28.0
A06p27810 Brassica napus HOM05D000537 ORTHO05D000415 3.6e-07 59.7 221 26.7
Medtr2g097020 Medicago truncatula HOM05D000537 ORTHO05D000415 3.6e-07 59.7 183 27.3
Peaxi162Scf00835g00112 Petunia axillaris HOM05D000537 ORTHO05D000415 3.6e-07 59.7 192 27.6
TAR623G0457 Trochodendron aralioides HOM05D000537 ORTHO05D000415 3.6e-07 59.7 149 29.5
vmacro14536 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 3.6e-07 59.7 169 28.4
Glyma.07G024100 Glycine max HOM05D000537 ORTHO05D000415 4.7e-07 59.3 185 30.3
HanXRQChr02g0049151 Helianthus annuus HOM05D000537 ORTHO05D000415 4.7e-07 59.3 214 26.6
Psat2g185120 Pisum sativum HOM05D000537 ORTHO05D000415 4.7e-07 59.3 169 29.6
Atru.chr12.430 Acer truncatum HOM05D000537 ORTHO05D000415 6.1e-07 58.9 186 28.5
Aqoxy7G03457 Aquilegia oxysepala HOM05D000537 ORTHO05D000415 6.1e-07 58.9 168 29.8
AL5G28090 Arabidopsis lyrata HOM05D000537 ORTHO05D000415 6.1e-07 58.9 183 27.9
Cfa011512 Carpinus fangiana HOM05D000537 ORTHO05D000415 6.1e-07 58.9 196 29.6
Cc03_g13660 Coffea canephora HOM05D000537 ORTHO05D000415 6.1e-07 58.9 210 26.7
Gorai.012G071000 Gossypium raimondii HOM05D000537 ORTHO05D000415 6.1e-07 58.9 147 29.9
Lj3g0025879 Lotus japonicus HOM05D000537 ORTHO05D000415 6.1e-07 58.9 186 28.5
TPR.G38828 Trifolium pratense HOM05D000537 ORTHO05D000415 6.1e-07 58.9 187 28.9
TPR.G6825 Trifolium pratense HOM05D000537 ORTHO05D000415 6.1e-07 58.9 213 24.4
BraA06t25720Z Brassica rapa HOM05D000537 ORTHO05D000415 8.0e-07 58.5 221 26.2
FAN11G0897 Fragaria x ananassa HOM05D000537 ORTHO05D000415 8.0e-07 58.5 125 34.4
Medtr2g095400 Medicago truncatula HOM05D000537 ORTHO05D000415 8.0e-07 58.5 188 26.6
SalBow6G4841 Salvia bowleyana HOM05D000537 ORTHO05D000415 8.0e-07 58.5 218 26.6
Sp5g13340 Schrenkiella parvula HOM05D000537 ORTHO05D000415 8.0e-07 58.5 221 27.1
Sc21g0005840 Simmondsia chinensis HOM05D000537 ORTHO05D000415 8.0e-07 58.5 188 26.6
SGA_v2.0_scaffold96G28928 Striga asiatica HOM05D000537 ORTHO05D000415 8.0e-07 58.5 148 29.7
TWI75G1439 Tripterygium wilfordii HOM05D000537 ORTHO05D000415 8.0e-07 58.5 128 32.0
HanXRQChr04g0098651 Helianthus annuus HOM05D000537 ORTHO05D000415 1.0e-06 58.2 152 27.0
TAR383G0294 Trochodendron aralioides HOM05D000537 ORTHO05D000415 1.0e-06 58.2 168 28.6
HPP92_006620 Vanilla planifolia HOM05D000537 ORTHO05D000415 1.0e-06 58.2 140 31.4
Gohir.A05G349100 Gossypium hirsutum HOM05D000537 ORTHO05D000415 1.4e-06 57.8 209 24.9
Phvul.L005943 Phaseolus vulgaris HOM05D000537 ORTHO05D000415 1.4e-06 57.8 166 28.3
PGSC0003DMG400004408 Solanum tuberosum HOM05D000537 ORTHO05D000415 1.4e-06 57.8 117 34.2
vmacro14513 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 1.4e-06 57.8 241 25.7
Cfa001460 Carpinus fangiana HOM05D000537 ORTHO05D000415 1.8e-06 57.4 232 27.6
Manes.07G117100 Manihot esculenta HOM05D000537 ORTHO05D000415 1.8e-06 57.4 125 32.8
Oeu010085.1 Olea europaea HOM05D000537 ORTHO05D000415 1.8e-06 57.4 138 29.7
Potri.010G202700 Populus trichocarpa HOM05D000537 ORTHO05D000415 1.8e-06 57.4 126 34.9
SGA_v2.0_scaffold203G41517 Striga asiatica HOM05D000537 ORTHO05D000415 1.8e-06 57.4 118 30.5
Lj6g0006696 Lotus japonicus HOM05D000537 ORTHO05D000415 2.3e-06 57.0 160 30.0
Lj6g0012433 Lotus japonicus HOM05D000537 ORTHO05D000415 2.3e-06 57.0 223 24.7
Potri.010G184800 Populus trichocarpa HOM05D000537 ORTHO05D000415 2.3e-06 57.0 178 28.1
SEGI_32878 Sequoiadendron giganteum HOM05D000537 ORTHO05D000415 2.3e-06 57.0 126 34.9
MSTRG.17830 Avicennia marina HOM05D000537 ORTHO05D000415 3.0e-06 56.6 136 29.4
CiPaw.02G184800 Carya illinoinensis HOM05D000537 ORTHO05D000415 3.0e-06 56.6 168 26.8
Duzib114G0977 Durio zibethinus HOM05D000537 ORTHO05D000415 3.0e-06 56.6 209 25.4
FvH4_3g36252 Fragaria vesca HOM05D000537 ORTHO05D000415 3.0e-06 56.6 113 33.6
FAN11G1648 Fragaria x ananassa HOM05D000537 ORTHO05D000415 3.0e-06 56.6 113 33.6
Gohir.D13G232600 Gossypium hirsutum HOM05D000537 ORTHO05D000415 3.0e-06 56.6 133 27.8
Gorai.013G263400 Gossypium raimondii HOM05D000537 ORTHO05D000415 3.0e-06 56.6 133 27.8
HanXRQChr07g0201371 Helianthus annuus HOM05D000537 ORTHO05D000415 3.0e-06 56.6 127 30.7
MD01G1135500 Malus domestica HOM05D000537 ORTHO05D000415 3.0e-06 56.6 234 24.4
MD09G1224300 Malus domestica HOM05D000537 ORTHO05D000415 3.0e-06 56.6 243 25.5
Manes.11G065100 Manihot esculenta HOM05D000537 ORTHO05D000415 3.0e-06 56.6 185 25.4
Sed0000180 Sechium edule HOM05D000537 ORTHO05D000415 3.0e-06 56.6 143 30.8
Aqoxy1G02419 Aquilegia oxysepala HOM05D000537 ORTHO05D000415 3.9e-06 56.2 127 31.5
EL10Ac2g04734 Beta vulgaris HOM05D000537 ORTHO05D000415 3.9e-06 56.2 138 29.0
COL.COLO4_15061 Corchorus olitorius HOM05D000537 ORTHO05D000415 5.2e-06 55.8 196 25.5
ECA238G2608 Erigeron canadensis HOM05D000537 ORTHO05D000415 5.2e-06 55.8 159 30.2
Eucgr.B02359 Eucalyptus grandis HOM05D000537 ORTHO05D000415 5.2e-06 55.8 174 28.2
Gohir.A13G227232 Gossypium hirsutum HOM05D000537 ORTHO05D000415 5.2e-06 55.8 191 23.6
Lj1C151T9 Lonicera japonica HOM05D000537 ORTHO05D000415 5.2e-06 55.8 125 32.0
Lalb_Chr18g0053251 Lupinus albus HOM05D000537 ORTHO05D000415 5.2e-06 55.8 161 29.2
Lalb_Chr20g0116931 Lupinus albus HOM05D000537 ORTHO05D000415 5.2e-06 55.8 219 26.0
Solyc06g005550.3 Solanum lycopersicum HOM05D000537 ORTHO05D000415 5.2e-06 55.8 193 28.5
THA.LOC104799343 Tarenaya hassleriana HOM05D000537 ORTHO05D000415 5.2e-06 55.8 189 28.0
Cpa.g.sc10.88 Carica papaya HOM05D000537 ORTHO05D000415 6.7e-06 55.5 169 28.4
Glyma.08G269000 Glycine max HOM05D000537 ORTHO05D000415 6.7e-06 55.5 171 28.7
LjContig00141g0012250 Lotus japonicus HOM05D000537 ORTHO05D000415 6.7e-06 55.5 182 27.5
Lalb_Chr04g0264381 Lupinus albus HOM05D000537 ORTHO05D000415 6.7e-06 55.5 186 28.5
MBI14_g44884_MAGBIO Magnolia biondii HOM05D000537 ORTHO05D000415 6.7e-06 55.5 144 28.5
Manes.04G103800 Manihot esculenta HOM05D000537 ORTHO05D000415 6.7e-06 55.5 187 24.6
Os02g0293300 Oryza sativa ssp. japonica HOM05D000537 ORTHO05D000415 6.7e-06 55.5 216 24.1
PSO017G6763 Papaver somniferum HOM05D000537 ORTHO05D000415 6.7e-06 55.5 181 25.4
PSO478G5148 Papaver somniferum HOM05D000537 ORTHO05D000415 6.7e-06 55.5 181 25.4
Psat5g285000 Pisum sativum HOM05D000537 ORTHO05D000415 6.7e-06 55.5 262 23.7
RcHm_v2.0_Chr2g0133201 Rosa chinensis HOM05D000537 ORTHO05D000415 6.7e-06 55.5 247 23.9
Sabra10G0142100 Salix brachista HOM05D000537 ORTHO05D000415 6.7e-06 55.5 185 29.2
TWI15G1090 Tripterygium wilfordii HOM05D000537 ORTHO05D000415 6.7e-06 55.5 131 31.3
A09p62700 Brassica napus HOM05D000537 ORTHO05D000415 8.8e-06 55.1 210 24.8
Cfa000027 Carpinus fangiana HOM05D000537 ORTHO05D000415 8.8e-06 55.1 118 32.2
Haze_01825 Corylus avellana HOM05D000537 ORTHO05D000415 8.8e-06 55.1 184 26.6
Lsat_1_v5_gn_8_15381 Lactuca sativa HOM05D000537 ORTHO05D000415 8.8e-06 55.1 231 25.1
Rhsim12G0187900 Rhododendron simsii HOM05D000537 ORTHO05D000415 8.8e-06 55.1 187 25.7
VMungo0331G1203 Vigna mungo HOM05D000537 ORTHO05D000415 8.8e-06 55.1 184 27.2
VMungo1080G1193 Vigna mungo HOM05D000537 ORTHO05D000415 8.8e-06 55.1 132 33.3
Zm00001eb416180 Zea mays HOM05D000537 ORTHO05D000415 8.8e-06 55.1 160 30.6


User provided reference genes

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