Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 4.6e-111 404.8 243 100.0
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 8.7e-94 347.4 235 88.9
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 6.9e-91 337.8 244 85.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 2.2e-89 332.8 244 83.2
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.4e-88 330.1 245 83.3
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 2.4e-88 329.3 244 82.8
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 1.0e-86 323.9 244 85.2
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 1.1e-85 320.5 244 82.0
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 1.5e-85 320.1 245 82.9
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.6e-84 316.6 246 85.0
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 2.1e-84 316.2 246 85.0
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 3.7e-84 315.5 246 84.6
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 8.1e-84 314.3 239 82.0
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 1.1e-83 313.9 246 84.1
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 2.4e-83 312.8 246 84.1
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 2.6e-82 309.3 247 81.4
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 9.0e-75 284.3 243 75.7
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.8e-54 216.9 189 76.2
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 2.1e-47 193.4 246 58.5
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 5.3e-43 178.7 236 55.5
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 7.0e-43 178.3 141 88.7
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 7.0e-43 178.3 231 55.4
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 3.2e-40 169.5 252 44.0
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 3.6e-39 166.0 245 44.9
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.8e-38 163.7 239 45.6
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.8e-38 163.7 250 43.2
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 3.0e-38 162.9 242 45.0
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 6.8e-38 161.8 250 42.8
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 6.8e-38 161.8 250 44.4
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 6.8e-38 161.8 248 44.0
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 8.8e-38 161.4 247 44.1
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 8.8e-38 161.4 239 45.2
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 2.6e-37 159.8 241 44.0
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 2.6e-37 159.8 253 43.5
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 3.4e-37 159.5 248 44.0
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 3.4e-37 159.5 238 41.6
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 7.5e-37 158.3 251 53.0
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 1.3e-36 157.5 255 42.4
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 2.2e-36 156.8 246 49.6
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 3.7e-36 156.0 245 53.9
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.1e-35 154.5 246 41.1
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.6e-34 150.6 244 41.4
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 2.7e-34 149.8 245 40.0
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 2.7e-34 149.8 243 42.0
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 5.9e-34 148.7 249 43.0
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 5.9e-34 148.7 239 41.0
BcaC01g01787 Brassica carinata HOM05D004667 ORTHO05D032196 7.7e-34 148.3 110 71.8
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.0e-33 147.9 241 45.2
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.3e-33 147.5 244 41.8
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 2.2e-33 146.7 242 40.1
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 2.2e-33 146.7 250 40.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 2.9e-33 146.4 159 55.3
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 2.9e-33 146.4 159 55.3
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.9e-33 146.4 242 40.1
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 5.0e-33 145.6 237 41.8
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 7.2e-32 141.7 247 40.5
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 7.2e-32 141.7 246 40.7
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 7.2e-32 141.7 249 41.8
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.2e-31 141.0 235 40.9
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.6e-31 140.6 225 40.4
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.1e-31 140.2 254 40.2
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 6.1e-31 138.7 242 38.4
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 6.1e-31 138.7 237 41.4
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 8.0e-31 138.3 239 41.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.4e-30 137.5 216 43.5
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 2.3e-30 136.7 218 41.7
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.3e-30 136.7 237 40.9
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 8.8e-30 134.8 218 44.0
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.5e-29 134.0 223 39.5
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.6e-29 133.3 243 39.1
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 9.8e-29 131.3 251 37.1
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.7e-28 130.6 230 39.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.8e-28 129.0 233 39.1
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 4.8e-28 129.0 235 40.0
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 1.4e-27 127.5 242 39.7
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.2e-26 124.4 234 49.1
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.6e-26 124.0 216 40.3
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 2.0e-26 123.6 234 49.1
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.7e-26 123.2 247 36.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 2.7e-26 123.2 232 49.6
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 3.5e-26 122.9 230 38.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 1.0e-25 121.3 76 80.3
C03p71870 Brassica napus HOM05D004667 ORTHO05D032196 1.0e-25 121.3 85 74.1
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.0e-25 121.3 245 34.7
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.3e-25 120.9 224 37.5
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 3.8e-25 119.4 220 38.2
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 6.6e-25 118.6 246 36.6
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.6e-25 118.2 243 36.6
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 8.6e-25 118.2 228 50.0
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 1.5e-24 117.5 235 41.3
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 3.3e-24 116.3 221 37.1
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 3.3e-24 116.3 248 34.3
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 4.2e-24 115.9 235 34.9
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.2e-23 114.4 221 34.4
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.2e-23 114.4 249 32.9
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.6e-23 114.0 76 76.3
BolC3t19480H Brassica oleracea HOM05D004667 ORTHO05D032196 2.8e-23 113.2 81 72.8
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.8e-23 113.2 221 49.3
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 3.6e-23 112.8 259 47.1
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 6.1e-23 112.1 234 34.6
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 6.1e-23 112.1 232 48.7
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 8.0e-23 111.7 231 45.9
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 8.0e-23 111.7 235 37.4
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.0e-22 111.3 255 32.2
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 1.4e-22 110.9 214 36.4
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 2.3e-22 110.2 217 35.0
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 3.0e-22 109.8 242 36.0
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 8.9e-22 108.2 238 33.6
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 1.2e-21 107.8 241 35.7
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.2e-21 107.8 248 33.9
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 2.0e-21 107.1 233 33.0
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 2.6e-21 106.7 169 44.4
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.5e-21 105.1 261 31.0
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 9.8e-21 104.8 239 33.9
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 9.8e-21 104.8 267 32.6
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.3e-20 104.4 209 37.3
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.7e-20 104.0 167 40.1
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 2.2e-20 103.6 249 32.9
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 2.2e-20 103.6 247 41.3
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.7e-20 102.8 225 31.6
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 4.9e-20 102.4 167 37.1
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 6.3e-20 102.1 257 30.7
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 6.3e-20 102.1 250 30.8
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 8.3e-20 101.7 234 33.3
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.4e-19 100.9 70 75.7
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 2.4e-19 100.1 218 31.2
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.2e-19 99.8 250 33.6
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 5.4e-19 99.0 78 62.8
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.6e-18 97.4 223 32.3
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.0e-18 97.1 218 32.6
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.5e-18 96.3 226 32.3
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.3e-17 94.4 232 31.0
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 2.3e-17 93.6 236 33.1
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 2.3e-17 93.6 214 33.2
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.5e-16 90.9 213 30.5
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.5e-16 90.9 246 29.7
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.5e-16 90.9 197 34.0
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 4.3e-16 89.4 223 31.4
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.6e-15 87.4 236 28.0
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 3.6e-15 86.3 213 40.4
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 8.0e-15 85.1 218 33.0
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.0e-14 84.7 214 30.8
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.0e-14 84.7 101 46.5
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.4e-14 84.3 97 44.3
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 6.8e-14 82.0 211 34.6
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 8.9e-14 81.6 92 42.4
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 2.6e-13 80.1 192 37.5
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 9.8e-13 78.2 76 60.5
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 9.8e-13 78.2 76 60.5
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 1.3e-12 77.8 240 30.8
BcaB03g16837 Brassica carinata HOM05D004667 ORTHO05D005522 3.7e-12 76.3 54 75.9
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 1.2e-10 71.2 43 76.7
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 2.7e-10 70.1 60 53.3
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 3.9e-09 66.2 60 65.0
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 6.6e-09 65.5 39 79.5
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.5e-08 64.3 102 37.3
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 1.5e-08 64.3 203 28.6
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 9.5e-08 61.6 79 36.7
BcaNung03021 Brassica carinata HOM05D003097 ORTHO05D003437 1.2e-07 61.2 66 45.5
C07p61510 Brassica napus HOM05D003097 ORTHO05D003437 1.2e-07 61.2 66 45.5
BolC7t46575H Brassica oleracea HOM05D003097 ORTHO05D003437 1.2e-07 61.2 66 45.5
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 1.2e-07 61.2 66 45.5
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 1.2e-07 61.2 84 36.9
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 3.6e-07 59.7 90 35.6
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 4.7e-07 59.3 68 39.7
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 4.7e-07 59.3 85 36.5
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 4.7e-07 59.3 67 40.3
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 6.2e-07 58.9 68 41.2
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 1.1e-06 58.2 92 33.7
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.1e-06 58.2 177 27.7
C02p18750 Brassica napus HOM05D003097 ORTHO05D003437 1.4e-06 57.8 68 42.6
BcaNung00768 Brassica carinata HOM05D003097 ORTHO05D003437 1.8e-06 57.4 68 41.2
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 1.8e-06 57.4 68 38.2
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 1.8e-06 57.4 68 36.8
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 3.1e-06 56.6 68 39.7
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 8.9e-06 55.1 92 37.0
Sed0015691 Sechium edule HOM05D003097 ORTHO05D003437 8.9e-06 55.1 64 39.1


User provided reference genes

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