Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 5.8e-248 860.5 464 100.0
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-223 779.6 464 87.9
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 2.2e-223 778.9 464 88.6
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-223 778.5 464 88.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 6.1e-221 770.8 464 88.1
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 5.7e-219 764.2 464 87.3
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 9.1e-217 756.9 464 88.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 4.5e-216 754.6 464 86.6
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 5.9e-216 754.2 464 86.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.2e-215 752.3 468 84.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.2e-214 748.0 462 86.4
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.2e-214 748.0 462 86.4
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.2e-214 747.3 464 89.2
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 9.4e-214 746.9 464 85.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-213 746.1 464 85.8
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.0e-212 741.9 470 83.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.9e-206 722.6 464 85.8
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 4.7e-205 718.0 464 84.7
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.4e-201 705.7 467 85.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 7.0e-201 704.1 480 80.0
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-199 699.5 472 80.7
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.9e-198 696.0 464 81.2
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.6e-189 665.2 470 76.2
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 6.8e-180 634.4 475 70.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.4e-179 632.1 455 78.0
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 5.7e-179 631.3 473 70.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 5.4e-177 624.8 474 70.0
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 7.0e-177 624.4 473 70.2
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 6.6e-175 617.8 475 67.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.3e-174 615.5 394 82.7
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.6e-173 613.2 477 69.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 2.1e-173 612.8 465 68.2
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.8e-173 612.5 470 68.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.7e-173 611.7 471 69.9
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 4.7e-173 611.7 476 69.7
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.2e-173 611.3 467 68.7
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 6.2e-173 611.3 471 69.0
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.0e-172 610.5 469 69.3
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.8e-172 609.8 479 68.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.8e-172 609.8 469 69.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.1e-172 609.0 477 68.3
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 4.0e-172 608.6 490 68.2
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.9e-172 607.4 471 68.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-171 606.7 475 66.5
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.0e-171 606.3 475 66.3
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.0e-171 606.3 466 68.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.4e-171 605.1 477 67.7
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.4e-171 605.1 467 74.7
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.8e-171 604.7 468 70.3
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.2e-170 602.8 472 66.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.2e-170 602.8 479 68.5
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.7e-170 602.1 468 68.2
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.7e-170 602.1 468 68.2
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 6.4e-170 601.3 472 68.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-169 599.7 465 68.4
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.9e-169 599.7 472 70.6
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.4e-169 599.4 469 69.3
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 3.2e-169 599.0 488 68.4
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.2e-168 597.0 473 66.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-168 596.7 462 66.7
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.7e-168 595.9 472 69.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 3.5e-168 595.5 469 67.6
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 3.5e-168 595.5 465 66.5
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.0e-168 594.7 465 66.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.0e-167 594.0 478 66.9
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.0e-167 594.0 466 68.5
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.0e-167 594.0 466 67.2
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.3e-167 593.6 476 66.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.3e-167 593.6 467 69.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.3e-167 592.8 465 69.9
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.0e-167 592.4 469 66.3
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.0e-167 591.7 467 68.5
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.5e-166 590.1 467 71.1
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.9e-166 589.7 474 66.5
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.3e-166 589.0 503 62.6
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 7.3e-166 587.8 466 68.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.5e-166 587.4 455 66.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.1e-164 583.9 466 70.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.3e-164 582.8 465 65.6
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.2e-164 581.6 504 65.1
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 6.8e-164 581.3 525 61.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.8e-164 581.3 383 75.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 8.9e-164 580.9 474 65.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.6e-163 579.3 468 65.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 4.4e-163 578.6 499 61.7
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 9.8e-163 577.4 397 75.1
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.3e-162 577.0 481 65.3
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.2e-162 576.2 504 65.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 4.9e-162 575.1 476 64.5
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 8.3e-162 574.3 474 69.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.4e-161 572.8 473 64.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.4e-161 572.8 475 67.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.1e-161 571.2 513 61.8
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.2e-160 570.5 474 68.1
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 6.6e-159 564.7 450 67.1
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.3e-158 562.4 478 64.6
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 4.3e-158 562.0 383 72.6
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 9.5e-158 560.8 464 64.4
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.6e-157 558.9 465 64.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 8.1e-157 557.8 452 67.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.1e-157 557.8 462 64.3
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.4e-156 557.0 531 57.4
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.8e-156 556.6 514 61.1
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.3e-156 556.2 461 64.9
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.2e-155 553.9 366 76.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.7e-154 548.9 332 81.3
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 6.4e-154 548.1 465 66.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 1.9e-153 546.6 493 60.4
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.4e-153 546.2 376 73.9
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.4e-153 545.0 473 63.8
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.7e-151 540.0 495 64.0
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.6e-151 538.1 479 63.3
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.2e-149 533.9 431 65.4
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.8e-148 530.0 477 62.5
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.4e-148 529.6 468 65.2
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.6e-147 526.2 468 64.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.6e-147 526.2 485 63.1
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 5.4e-145 518.5 446 61.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.5e-144 515.8 435 66.4
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.5e-142 509.6 274 88.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.3e-140 501.9 466 60.3
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.9e-140 501.5 404 67.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.4e-139 498.8 279 84.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.9e-138 496.1 455 56.7
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 6.4e-138 495.0 461 63.6
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.4e-137 493.8 503 57.7
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 7.4e-134 481.5 331 70.1
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 9.0e-132 474.6 460 56.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.9e-129 466.8 494 53.8
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.2e-129 466.1 330 67.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.2e-129 465.7 481 54.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.2e-129 465.7 395 63.5
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 4.5e-123 445.7 334 67.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.5e-121 438.7 405 60.5
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 9.3e-121 438.0 279 72.8
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.0e-119 433.0 450 56.7
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.8e-117 426.4 356 61.8
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-114 417.9 567 48.3
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.0e-111 406.4 443 54.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-110 404.1 467 51.6
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 4.8e-101 372.5 327 55.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.1e-100 371.3 337 55.8
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-97 360.9 287 64.1
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.3e-94 349.7 388 52.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.2e-75 288.1 263 56.7
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.5e-75 286.2 468 45.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.5e-59 233.4 466 38.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.2e-53 214.2 384 35.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 9.9e-38 162.2 247 45.3
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 7.1e-36 156.0 120 66.7
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.5e-35 153.7 381 32.5
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.4e-28 129.8 81 76.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.3e-25 120.6 169 46.2
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-19 102.1 197 38.6
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 7.9e-19 99.4 118 49.2
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.5e-17 94.4 143 44.1
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.4e-12 77.8 205 34.1
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-10 72.0 193 34.7


User provided reference genes

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