Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 0.0e+00 1110.1 604 100.0
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 2.0e-232 809.3 610 74.4
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 1.1e-227 793.5 610 72.0
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 3.7e-226 788.5 610 72.3
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 5.8e-224 781.2 609 74.9
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 1.2e-221 773.5 606 71.1
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 3.1e-209 732.3 610 70.5
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 4.5e-208 728.4 606 71.6
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 4.5e-208 728.4 606 71.6
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 4.5e-208 728.4 606 71.6
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 1.0e-207 727.2 608 71.5
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 2.2e-207 726.1 608 71.4
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 4.2e-198 695.3 622 64.1
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 4.0e-148 529.3 630 53.5
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.2e-146 523.5 641 52.3
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 2.4e-108 397.1 630 42.9
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.0e-107 394.0 644 41.5
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 2.0e-107 394.0 644 41.5
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 6.5e-106 389.0 645 40.8
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 4.2e-105 386.3 650 42.0
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 3.0e-103 380.2 640 41.2
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 5.1e-103 379.4 649 40.7
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 5.3e-100 369.4 669 40.1
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 1.7e-98 364.4 641 39.5
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 1.1e-97 361.7 649 43.9
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 1.9e-97 360.9 695 37.7
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 9.4e-97 358.6 685 37.5
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 4.6e-96 356.3 638 39.2
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 6.1e-96 355.9 649 40.1
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.8e-95 354.4 692 37.4
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 1.8e-95 354.4 692 37.4
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 6.7e-95 352.4 643 39.2
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 2.5e-94 350.5 696 37.9
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.3e-93 348.2 695 37.0
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.8e-92 344.4 633 39.5
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 6.9e-92 342.4 695 37.1
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 2.9e-90 337.0 637 37.8
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 3.2e-89 333.6 655 40.6
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 9.4e-89 332.0 638 36.4
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 1.6e-88 331.3 692 37.3
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.8e-87 327.8 684 36.4
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 5.1e-87 326.2 639 37.4
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 4.8e-85 319.7 686 35.9
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.1e-84 318.5 661 39.0
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 4.1e-84 316.6 622 38.6
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 6.5e-82 309.3 681 34.9
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 2.5e-81 307.4 622 36.5
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 1.6e-80 304.7 624 38.0
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.6e-80 304.7 687 33.8
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 1.6e-80 304.7 617 39.1
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 8.0e-80 302.4 630 37.3
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 1.5e-78 298.1 632 39.1
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 3.3e-78 297.0 641 35.4
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.8e-76 291.2 643 36.1
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 7.0e-76 289.3 634 36.8
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 4.5e-75 286.6 629 36.7
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 4.5e-75 286.6 658 38.8
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.0e-74 285.4 605 36.5
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 3.8e-74 283.5 621 37.7
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 6.5e-74 282.7 701 33.8
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 1.1e-73 282.0 671 35.2
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 2.7e-72 277.3 710 36.8
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.7e-72 277.3 644 34.9
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 1.0e-71 275.4 637 34.2
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 1.4e-71 275.0 614 34.9
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 4.0e-71 273.5 699 36.5
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.5e-70 271.6 609 35.5
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 2.8e-69 267.3 633 35.1
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 4.8e-69 266.5 613 35.4
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 1.1e-68 265.4 642 34.3
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.5e-67 260.0 639 34.6
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.0e-66 258.8 633 32.9
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.2e-65 253.4 601 33.8
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 4.2e-65 253.4 626 37.2
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 1.2e-64 251.9 626 36.4
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 3.6e-64 250.4 638 33.9
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 1.4e-63 248.4 703 32.1
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 5.7e-62 243.0 304 48.4
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.7e-62 243.0 315 47.9
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.0e-58 232.3 585 33.3
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 1.3e-58 231.9 516 34.7
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 2.9e-58 230.7 308 43.8
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.5e-57 228.4 643 33.7
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 2.5e-57 227.6 571 35.7
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 1.8e-55 221.5 616 32.6
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.4e-54 216.9 676 34.5
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 7.5e-54 216.1 633 30.2
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 9.8e-54 215.7 308 45.1
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 6.3e-53 213.0 639 32.4
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 1.4e-52 211.8 631 30.6
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 5.4e-52 209.9 411 39.7
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 7.8e-51 206.1 305 41.6
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 2.9e-50 204.1 616 29.5
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 3.9e-50 203.8 631 31.2
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 5.0e-50 203.4 256 45.3
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 8.6e-50 202.6 651 33.2
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 2.5e-49 201.1 359 40.1
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 2.1e-48 198.0 672 29.9
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.5e-46 191.8 175 57.1
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 1.4e-44 185.3 301 39.9
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 1.4e-44 185.3 192 53.1
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 2.7e-43 181.0 463 32.6
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.3e-42 177.9 470 32.1
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 5.0e-42 176.8 402 33.8
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.2e-38 165.6 208 50.5
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 9.2e-36 156.0 384 32.8
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 1.6e-35 155.2 341 35.5
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 8.6e-34 149.4 194 48.5
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 8.6e-34 149.4 130 60.8
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 4.3e-33 147.1 110 66.4
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 2.8e-32 144.4 411 32.4
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 5.2e-31 140.2 671 25.2
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 5.8e-30 136.7 540 28.0
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 2.4e-23 114.8 315 32.4
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 3.2e-20 104.4 271 31.7
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 3.2e-20 104.4 277 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 9.3e-20 102.8 77 57.1
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 7.8e-19 99.8 313 29.1
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 9.6e-17 92.8 162 40.7
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 6.9e-15 86.7 327 26.9
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 6.4e-13 80.1 143 39.9
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 3.2e-12 77.8 241 33.6
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 1.9e-09 68.6 359 25.1
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 1.9e-09 68.6 216 26.4
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 4.8e-08 63.9 85 36.5
SMO351G0024 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 4.5e-06 57.4 51 52.9
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 9.9e-06 56.2 200 31.5


User provided reference genes

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