Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 6.4e-29 130.2 71 100.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 5.8e-22 107.1 69 87.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 8.3e-21 103.2 71 77.5
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.4e-20 102.4 56 94.6
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.4e-20 102.4 56 94.6
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 5.4e-20 100.5 56 92.9
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 5.4e-20 100.5 56 92.9
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.1e-19 98.6 71 77.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 6.0e-19 97.1 60 86.7
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 3.0e-18 94.7 64 75.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 3.9e-18 94.4 60 83.3
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.6e-14 81.6 59 71.2
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 4.4e-14 80.9 45 91.1
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.7e-13 79.0 52 73.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.7e-13 79.0 52 75.0
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 6.4e-13 77.0 48 77.1
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.1e-12 76.3 54 66.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.9e-12 75.5 54 66.7
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 3.2e-12 74.7 70 55.7
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 4.1e-12 74.3 55 67.3
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 4.1e-12 74.3 67 58.2
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 5.4e-12 73.9 71 57.7
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 7.1e-12 73.6 56 66.1
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 7.1e-12 73.6 54 64.8
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 7.1e-12 73.6 50 70.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.2e-11 72.8 53 64.2
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.1e-11 72.0 48 72.9
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.1e-11 72.0 50 68.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.7e-11 71.6 60 65.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.7e-11 71.6 56 60.7
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.7e-11 71.6 49 73.5
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.5e-11 71.2 54 63.0
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 6.0e-11 70.5 56 64.3
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 6.0e-11 70.5 53 64.2
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 6.0e-11 70.5 54 64.8
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 7.8e-11 70.1 50 68.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.0e-10 69.7 47 70.2
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.0e-10 69.7 62 61.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.0e-10 69.7 62 58.1
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.0e-10 69.7 49 71.4
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.0e-10 69.7 50 66.0
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.0e-10 69.7 59 59.3
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.3e-10 69.3 44 72.7
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.3e-10 69.3 54 61.1
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.7e-10 68.9 45 71.1
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.7e-10 68.9 57 64.9
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.7e-10 68.9 57 64.9
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.7e-10 68.9 50 72.0
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.7e-10 68.9 61 57.4
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.3e-10 68.6 56 60.7
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.3e-10 68.6 65 55.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.3e-10 68.6 63 66.7
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.9e-10 67.8 49 71.4
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 3.9e-10 67.8 53 62.3
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.9e-10 67.8 52 63.5
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 5.1e-10 67.4 55 63.6
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 6.6e-10 67.0 77 50.6
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 6.6e-10 67.0 50 70.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 6.6e-10 67.0 70 52.9
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 8.6e-10 66.6 61 55.7
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.6e-10 66.6 56 58.9
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 8.6e-10 66.6 50 70.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 8.6e-10 66.6 54 61.1
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.1e-09 66.2 52 61.5
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.5e-09 65.9 63 58.7
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.5e-09 65.9 56 58.9
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.5e-09 65.9 52 59.6
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.9e-09 65.5 47 66.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.5e-09 65.1 55 58.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.5e-09 65.1 56 60.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.5e-09 65.1 50 68.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.3e-09 64.7 45 66.7
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 3.3e-09 64.7 48 62.5
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.3e-09 64.7 61 59.0
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 4.3e-09 64.3 50 58.0
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.3e-09 64.3 50 68.0
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 7.3e-09 63.5 50 68.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 7.3e-09 63.5 58 55.2
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.2e-08 62.8 48 64.6
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.2e-08 62.8 50 60.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 2.8e-08 61.6 44 70.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.6e-08 61.2 51 58.8
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 3.1e-07 58.2 50 68.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 4.0e-07 57.8 50 56.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.2e-06 56.2 68 51.5
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.5e-06 55.8 49 53.1
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 2.0e-06 55.5 50 62.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 2.6e-06 55.1 52 57.7
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.4e-06 54.3 43 62.8


User provided reference genes

Program Settings