Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 3.6e-157 558.1 273 100.0
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 8.7e-143 510.4 273 91.2
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 2.5e-142 508.8 275 90.9
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 5.3e-140 501.1 276 91.7
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 6.9e-140 500.7 277 91.0
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 1.2e-139 500.0 273 90.1
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 7.6e-139 497.3 274 91.2
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 4.9e-138 494.6 275 89.5
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 1.9e-137 492.7 279 89.6
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 1.9e-137 492.7 279 89.6
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 3.2e-137 491.9 276 90.9
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 2.1e-136 489.2 276 91.3
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 1.0e-135 486.9 278 89.6
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 1.3e-135 486.5 276 90.9
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 6.5e-130 467.6 258 87.6
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 3.9e-119 431.8 278 79.1
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 2.4e-108 396.0 266 73.3
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 1.3e-106 390.2 273 70.3
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 1.9e-105 386.3 250 76.0
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 9.4e-105 384.0 258 72.5
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 1.2e-104 383.6 261 73.9
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 2.7e-104 382.5 247 75.3
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 2.7e-104 382.5 268 70.9
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 3.6e-104 382.1 241 76.8
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 1.4e-103 380.2 266 69.9
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 2.0e-102 376.3 247 73.7
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 2.6e-102 375.9 258 70.9
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 4.4e-102 375.2 268 68.7
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 1.7e-101 373.2 262 69.8
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 2.2e-101 372.9 263 69.6
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 3.7e-101 372.1 258 72.5
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 4.8e-101 371.7 236 75.0
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 6.3e-101 371.3 253 71.5
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 8.2e-101 370.9 236 75.4
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 1.1e-100 370.5 239 75.7
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 1.1e-100 370.5 247 73.3
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.8e-100 369.8 247 72.5
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 1.8e-100 369.8 249 72.7
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.4e-100 369.4 252 72.2
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 3.1e-100 369.0 255 72.9
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 4.1e-100 368.6 249 72.7
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 5.3e-100 368.2 258 70.2
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 7.0e-100 367.9 248 73.8
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 7.0e-100 367.9 259 72.6
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 7.0e-100 367.9 239 73.6
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 9.1e-100 367.5 249 72.7
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 9.1e-100 367.5 252 73.0
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 2.0e-99 366.3 240 75.0
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 2.6e-99 365.9 246 72.0
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 3.5e-99 365.5 237 74.3
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 5.9e-99 364.8 236 76.3
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 1.7e-98 363.2 230 77.8
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 3.8e-98 362.1 241 71.8
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 5.0e-98 361.7 256 68.0
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 6.5e-98 361.3 259 69.9
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 8.5e-98 360.9 273 65.9
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 8.5e-98 360.9 255 70.2
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.5e-97 360.1 273 65.6
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 3.2e-97 359.0 254 72.0
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 3.2e-97 359.0 267 67.4
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 4.2e-97 358.6 251 72.1
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 5.5e-97 358.2 261 69.0
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 7.2e-97 357.8 259 69.1
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 7.2e-97 357.8 241 73.0
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 9.4e-97 357.5 259 69.1
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 9.4e-97 357.5 259 69.1
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 1.6e-96 356.7 239 73.6
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.1e-96 356.3 255 68.2
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 2.7e-96 355.9 251 68.9
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 3.6e-96 355.5 251 68.5
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 8.0e-96 354.4 252 70.2
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 8.0e-96 354.4 238 72.3
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 1.4e-95 353.6 258 67.8
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 2.3e-95 352.8 279 65.9
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 4.0e-95 352.1 249 69.5
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 6.7e-95 351.3 280 65.4
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 8.8e-95 350.9 238 72.7
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 1.2e-94 350.5 239 71.5
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 3.3e-94 349.0 239 71.1
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 7.5e-94 347.8 238 72.7
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 3.7e-93 345.5 235 70.6
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 4.8e-93 345.1 269 63.9
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 1.1e-92 344.0 236 71.2
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 2.0e-91 339.7 240 65.8
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 3.5e-91 339.0 321 55.8
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 4.5e-91 338.6 235 68.5
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 8.5e-90 334.3 226 72.6
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.1e-89 334.0 216 75.5
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 4.2e-89 332.0 308 57.5
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 5.5e-89 331.6 239 67.4
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.7e-88 329.3 219 74.4
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 1.8e-87 326.6 219 73.1
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 2.3e-87 326.2 232 70.7
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 2.3e-87 326.2 218 71.6
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 4.0e-87 325.5 216 72.7
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 9.8e-86 320.9 217 72.4
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 2.8e-85 319.3 219 72.6
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 4.1e-84 315.5 226 68.1
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 4.2e-81 305.4 207 74.4
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.6e-80 302.4 209 70.8
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 8.6e-74 281.2 205 65.9
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 1.9e-73 280.0 312 52.6
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 8.9e-71 271.2 231 59.7
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 1.1e-68 264.2 146 94.5
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 1.1e-68 264.2 146 93.2
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 1.4e-68 263.8 182 73.6
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 5.4e-68 261.9 146 93.8
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 2.3e-66 256.5 232 54.3
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 9.5e-65 251.1 174 73.0
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 3.4e-62 242.7 241 51.9
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 2.2e-61 240.0 232 53.0
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 5.4e-60 235.3 151 72.8
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 1.7e-58 230.3 124 92.7
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 2.6e-54 216.5 239 47.3
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 3.3e-49 199.5 141 72.3
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.8e-47 191.8 144 66.0
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 4.4e-46 189.1 103 95.1
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 2.4e-44 183.3 183 55.2
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 3.9e-42 176.0 108 73.1
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 2.0e-38 163.7 122 69.7
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 4.2e-36 156.0 96 79.2
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 2.1e-32 143.7 95 74.7
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 6.2e-24 115.5 89 56.2
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.9e-21 105.9 116 50.9
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 7.9e-19 98.6 122 51.6
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 3.0e-18 96.7 122 51.6
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 1.5e-17 94.4 47 87.2
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 6.2e-16 89.0 172 32.6
BolC4t25378H Brassica oleracea HOM05D005955 ORTHO05D007633 3.5e-11 73.2 51 76.5


User provided reference genes

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