Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 0.0e+00 1158.3 577 100.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 0.0e+00 1095.5 577 93.2
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 0.0e+00 1083.9 577 91.9
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 0.0e+00 1080.1 577 91.5
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 0.0e+00 1078.2 577 91.3
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 3.9e-312 1074.3 577 90.6
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 7.9e-312 1072.8 595 89.1
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 3.9e-310 1067.4 577 90.5
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.0e-302 1042.7 577 89.3
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.6e-298 1028.1 577 86.7
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 7.2e-280 966.8 583 81.8
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.1e-279 965.3 583 83.0
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.8e-276 954.9 577 80.9
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.9e-236 821.2 578 68.3
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.6e-234 816.2 577 69.2
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 6.8e-230 800.8 579 67.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.5e-229 799.7 578 67.8
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 2.6e-229 798.9 588 65.8
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.2e-228 795.8 464 84.9
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 4.9e-228 794.7 578 66.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 8.3e-228 793.9 580 67.1
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.4e-227 792.3 578 67.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.2e-226 790.0 580 67.4
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.0e-226 789.3 577 66.7
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 3.0e-225 785.4 536 70.5
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.5e-224 782.3 578 66.1
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 3.3e-224 781.9 579 67.2
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 7.3e-224 780.8 577 65.7
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.3e-224 780.8 577 64.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 4.7e-223 778.1 577 65.7
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.5e-221 773.1 579 65.8
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 2.9e-220 768.8 581 64.5
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 6.4e-220 767.7 584 65.1
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 3.2e-219 765.4 567 66.8
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.2e-218 763.5 539 67.3
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 2.1e-218 762.7 577 65.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 3.0e-217 758.8 573 64.6
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.5e-216 756.5 575 63.0
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.5e-216 756.5 577 64.1
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 4.3e-216 755.0 582 63.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 4.3e-216 755.0 582 62.5
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.1e-214 750.4 588 63.4
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.4e-214 749.2 555 65.2
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 5.2e-214 748.0 587 62.4
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 5.2e-214 748.0 619 59.9
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.6e-213 745.7 573 64.7
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 5.8e-213 744.6 535 65.4
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 9.9e-213 743.8 569 63.6
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 1.7e-212 743.0 536 66.2
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 8.4e-212 740.7 576 62.8
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 5.4e-211 738.0 580 62.4
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.2e-210 736.9 573 63.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.6e-210 736.5 579 61.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 3.5e-210 735.3 574 62.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 6.0e-210 734.6 559 63.7
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.0e-209 733.8 578 61.2
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.3e-209 733.4 529 66.0
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 6.6e-209 731.1 576 62.0
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 4.3e-208 728.4 571 62.0
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 4.3e-208 728.4 574 61.3
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 2.8e-207 725.7 571 61.3
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 6.9e-206 721.1 514 67.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 6.9e-206 721.1 537 63.9
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.6e-205 719.2 537 63.9
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.9e-204 715.7 537 62.2
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.7e-201 706.4 624 57.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 5.6e-200 701.4 579 60.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.6e-199 699.9 571 60.9
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 7.6e-197 691.0 572 61.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 8.4e-196 687.6 544 61.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 9.3e-195 684.1 657 53.7
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 2.4e-190 669.5 574 56.8
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 1.2e-189 667.2 494 64.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 4.2e-187 658.7 462 68.2
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.6e-183 646.7 536 57.5
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.8e-183 646.0 463 67.2
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.5e-181 640.2 460 65.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.8e-177 626.7 460 63.9
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 8.2e-175 617.8 460 64.3
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.4e-174 617.1 613 52.7
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.0e-165 586.6 426 64.8
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.0e-164 584.3 533 55.9
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.8e-164 582.4 310 92.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 3.8e-164 582.4 537 57.4
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.9e-161 572.4 463 61.3
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 3.3e-160 569.3 397 67.8
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 4.8e-159 565.5 573 51.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.7e-154 549.7 511 56.2
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 5.9e-149 531.9 530 49.8
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 3.8e-148 529.3 567 46.9
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 1.8e-145 520.4 533 48.6
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.3e-140 504.2 351 69.5
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 7.2e-139 498.4 534 47.6
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 8.0e-138 495.0 395 60.8
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 9.8e-136 488.0 525 50.3
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.3e-124 450.3 362 59.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.8e-113 414.1 355 55.5
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 3.7e-111 406.4 296 62.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.4e-110 402.5 536 42.7
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.4e-102 377.9 267 68.9
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 9.2e-102 375.2 271 67.5
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.9e-95 352.8 291 61.2
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.1e-89 333.6 513 40.9
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 4.0e-89 333.2 417 46.3
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 7.6e-88 328.9 249 62.2
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 6.0e-85 319.3 563 36.1
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.0e-73 280.0 474 35.9
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.3e-66 258.5 213 58.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.6e-66 258.1 498 36.5
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.0e-64 251.1 202 57.4
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.1e-51 208.8 545 30.8
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 3.3e-51 207.2 145 64.1
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.7e-50 203.8 593 28.0
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.7e-47 194.9 123 74.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.5e-46 191.0 398 35.9
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 4.7e-29 133.7 137 53.3
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 7.5e-27 126.3 97 61.9
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.7e-26 124.0 84 67.9
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 4.2e-22 110.5 114 50.0
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 2.1e-21 108.2 57 82.5
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.1e-21 108.2 191 38.7
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 8.8e-20 102.8 81 63.0
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.8e-18 97.8 538 24.9
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 8.3e-18 96.3 105 48.6
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.4e-17 94.7 110 46.4
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.1e-17 94.0 136 40.4
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 4.1e-17 94.0 105 49.5
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.2e-16 92.4 208 31.2
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.0e-16 91.7 130 42.3
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.8e-13 81.3 57 63.2
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 7.5e-11 73.2 42 81.0
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.7e-10 72.0 53 60.4
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.7e-10 72.0 46 71.7
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 1.8e-09 68.6 42 78.6
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.3e-07 61.6 38 73.7
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.3e-07 61.6 38 73.7
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 3.3e-06 57.8 35 74.3


User provided reference genes

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