Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 2.4e-207 725.3 380 100.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.9e-172 609.4 382 85.1
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.9e-172 609.4 382 85.9
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 7.3e-172 607.4 382 85.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.1e-170 603.6 383 84.1
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.1e-163 579.3 378 82.8
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 4.0e-162 575.1 382 80.6
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.5e-161 573.2 380 81.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.5e-161 573.2 380 81.1
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.4e-161 572.0 378 81.2
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.7e-160 569.7 380 80.8
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.4e-159 565.8 380 80.5
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 9.2e-159 563.9 381 81.1
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.6e-158 563.1 382 80.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 7.3e-156 554.3 431 71.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 6.2e-155 551.2 377 78.0
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.3e-149 533.5 385 77.1
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.6e-123 446.8 377 65.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.4e-122 443.0 390 63.3
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 3.1e-114 416.0 378 65.1
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.5e-108 397.1 386 58.8
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.7e-107 393.7 381 59.1
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 5.3e-106 388.7 386 59.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 5.3e-106 388.7 375 60.0
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.0e-104 384.4 384 57.6
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.9e-104 382.9 387 57.9
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 6.5e-104 381.7 384 58.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 8.5e-104 381.3 385 57.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.4e-103 380.6 382 57.1
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.2e-103 379.4 385 59.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.6e-102 377.1 389 58.1
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.6e-102 377.1 381 56.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.1e-102 376.7 382 56.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 2.1e-102 376.7 386 58.5
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.0e-101 374.4 385 56.1
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.0e-101 374.4 389 56.8
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.8e-101 373.6 385 55.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.0e-101 372.9 389 56.8
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.9e-101 372.5 396 54.5
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.9e-101 372.5 388 56.4
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.7e-101 371.7 389 58.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.7e-101 371.7 389 58.1
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 6.7e-101 371.7 385 57.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 6.7e-101 371.7 381 57.5
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.7e-101 371.7 398 55.0
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 8.8e-101 371.3 391 57.3
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.1e-100 370.9 384 55.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.1e-100 370.9 381 55.6
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.5e-100 370.5 386 56.5
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 7.4e-100 368.2 392 55.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 7.4e-100 368.2 383 57.4
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.3e-99 367.5 378 56.3
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.2e-99 366.7 382 57.1
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.2e-99 366.7 407 55.3
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.8e-99 366.3 386 56.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.8e-99 366.3 380 56.6
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.8e-99 366.3 380 56.3
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.8e-99 366.3 379 57.3
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.8e-99 366.3 371 56.1
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.8e-99 366.3 380 55.5
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 6.3e-99 365.2 384 55.7
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 6.3e-99 365.2 388 56.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.4e-98 364.0 383 55.9
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.4e-98 364.0 381 56.4
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.1e-98 362.8 379 56.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 7.0e-98 361.7 376 56.4
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.0e-97 360.1 374 55.3
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.6e-97 359.8 378 54.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.5e-97 359.4 393 55.5
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.5e-97 359.0 393 55.2
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.9e-97 358.6 381 54.3
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.0e-96 357.8 383 54.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.2e-96 356.7 380 55.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 5.0e-96 355.5 397 54.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.4e-95 354.0 376 55.1
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.9e-95 353.6 384 53.4
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 4.2e-95 352.4 380 54.7
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.5e-95 352.1 385 54.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 5.5e-95 352.1 383 54.0
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.2e-94 350.9 383 55.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.6e-94 350.5 384 53.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-93 347.4 380 52.4
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.4e-93 347.4 363 57.0
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 5.2e-93 345.5 381 52.5
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 6.7e-93 345.1 378 54.0
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.7e-93 345.1 378 54.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 8.8e-93 344.7 375 53.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-92 344.4 378 54.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 5.7e-92 342.0 412 51.5
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.3e-91 340.9 385 51.9
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 3.7e-91 339.3 395 50.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.8e-91 339.0 442 47.7
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 5.3e-90 335.5 395 50.1
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.2e-89 334.3 386 53.1
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 3.5e-89 332.8 386 52.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.5e-89 332.4 401 48.9
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.9e-89 332.0 377 51.2
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 7.7e-89 331.6 374 54.0
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 7.2e-87 325.1 389 52.4
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 3.0e-85 319.7 410 49.0
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.2e-83 313.5 379 53.0
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.2e-83 313.5 377 50.4
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.8e-83 312.4 386 51.3
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-82 311.2 384 51.8
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 7.0e-82 308.5 378 51.3
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 9.1e-82 308.1 383 49.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.7e-80 303.9 382 49.2
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 4.2e-79 299.3 360 48.3
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.2e-79 298.5 361 50.1
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.8e-77 293.9 387 46.5
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.8e-77 292.0 384 47.7
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.5e-76 290.8 387 47.5
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 4.1e-74 282.7 374 47.1
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.1e-70 270.4 381 45.4
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.3e-64 251.1 405 40.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.3e-59 234.6 329 47.7
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.0e-56 223.4 242 54.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 8.6e-56 221.9 241 55.2
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 4.3e-55 219.5 445 34.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.5e-52 211.1 365 38.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-50 204.5 309 45.6
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.1e-45 186.8 206 52.4
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 6.0e-41 172.6 278 41.4
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 2.6e-36 157.1 380 31.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.1e-31 141.7 120 61.7
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 9.6e-31 138.7 160 53.8
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.4e-29 134.0 124 58.9
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.6e-25 121.3 226 39.8
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.9e-16 90.1 406 25.1
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.9e-15 87.8 75 56.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.5e-15 87.4 55 78.2
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.5e-15 87.4 259 29.0
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.3e-14 85.1 102 50.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.3e-14 85.1 437 25.2
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.1e-13 80.5 55 70.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.8e-11 73.6 50 72.0
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 6.5e-11 72.8 116 43.1
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-07 61.2 65 53.8
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 3.3e-07 60.5 431 23.9
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 7.4e-07 59.3 62 56.5
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.3e-06 58.5 104 42.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 6.2e-06 56.2 58 56.9


User provided reference genes

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