Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1868.6 941 100.0
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1629.8 943 87.6
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1609.7 943 87.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1598.9 945 86.0
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1580.8 944 85.7
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1571.2 945 85.5
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1569.7 943 84.7
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1546.6 937 84.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1532.7 958 83.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1528.5 948 83.9
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1518.4 967 82.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1401.7 933 79.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1389.8 949 77.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1330.1 976 73.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 0.0e+00 1245.3 952 69.1
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1234.9 959 70.8
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.5e-274 949.1 983 53.4
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-269 933.3 566 85.0
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.6e-266 921.4 940 54.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.4e-264 916.8 969 52.3
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 3.1e-264 915.6 953 53.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.2e-263 913.7 967 52.5
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.7e-260 902.5 955 53.3
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 7.9e-260 901.0 979 51.5
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.8e-259 899.8 984 52.8
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.3e-259 899.4 937 52.4
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 6.7e-259 897.9 947 52.6
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.1e-256 889.0 962 51.7
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 9.0e-256 887.5 976 51.5
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.5e-255 885.2 981 51.1
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-254 884.0 941 51.8
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 5.5e-253 878.2 939 51.5
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.5e-250 870.2 979 50.6
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.9e-250 869.8 969 50.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.2e-249 864.4 948 51.1
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.1e-248 864.0 962 50.8
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.1e-248 862.4 965 50.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.9e-247 858.2 955 52.5
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.7e-247 857.8 972 51.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.0e-246 857.4 927 50.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.2e-246 856.3 964 49.9
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.9e-246 855.9 955 50.4
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.8e-246 855.5 964 49.5
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.5e-245 851.7 940 51.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 7.2e-245 851.3 941 50.5
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.4e-245 850.9 972 50.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-244 850.5 972 50.9
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.4e-243 847.0 948 50.5
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.9e-243 845.5 929 52.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 6.7e-243 844.7 965 49.1
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.7e-243 844.7 959 50.4
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 8.8e-243 844.3 956 50.2
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.5e-242 842.8 989 49.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 9.7e-242 840.9 995 50.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.7e-241 840.1 936 50.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.2e-241 839.7 943 50.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.2e-241 839.7 911 51.7
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.2e-241 839.7 955 49.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 3.7e-241 839.0 962 49.5
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.8e-240 836.6 954 49.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 3.1e-240 835.9 934 49.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.2e-239 833.9 936 49.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 5.9e-239 831.6 955 49.0
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.3e-238 830.5 930 50.3
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.5e-238 827.8 804 55.2
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 8.5e-238 827.8 917 51.0
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.1e-237 827.4 942 50.4
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.5e-237 826.2 908 50.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.2e-237 825.5 979 50.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 5.5e-237 825.1 958 49.3
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.2e-236 823.9 967 48.4
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.6e-236 823.5 963 49.2
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.1e-236 823.2 938 50.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 4.7e-236 822.0 989 49.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 8.8e-235 817.8 971 49.9
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.5e-234 817.0 981 48.8
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.6e-234 816.2 1002 47.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-233 813.5 979 49.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 3.7e-233 812.4 948 50.2
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.1e-232 810.8 976 49.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.8e-232 810.1 977 49.1
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.1e-232 809.3 1027 46.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.1e-232 809.3 954 49.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.0e-231 806.6 942 49.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 2.5e-229 799.7 678 59.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.5e-226 790.4 930 48.6
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 8.2e-225 784.6 963 47.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 8.2e-225 784.6 963 47.0
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.6e-223 780.4 930 48.3
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 3.5e-223 779.2 921 49.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 3.5e-223 779.2 663 59.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 5.9e-223 778.5 654 60.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 8.0e-220 768.1 898 48.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.1e-216 757.7 958 47.5
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 9.1e-216 754.6 823 51.4
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.0e-214 751.1 999 44.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-214 750.7 964 46.6
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.7e-209 733.8 706 55.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.2e-209 733.4 943 46.4
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.8e-209 733.0 838 50.4
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 4.2e-205 719.2 959 45.3
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.0e-199 700.3 981 43.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.7e-193 679.5 615 58.4
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.1e-192 676.0 694 50.4
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 4.6e-191 672.5 798 49.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.0e-190 671.4 788 48.1
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.6e-188 662.9 958 41.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 8.0e-188 661.8 709 48.5
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.7e-177 626.3 938 42.4
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.7e-166 590.9 760 44.1
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 8.4e-161 572.0 434 63.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 8.4e-161 572.0 620 49.5
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.1e-160 571.6 435 64.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.3e-158 563.9 730 45.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 7.6e-154 548.9 631 46.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 9.3e-152 542.0 849 40.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 7.4e-149 532.3 747 42.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.6e-146 523.9 663 44.6
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-140 504.2 439 62.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.7e-135 487.3 711 42.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.6e-135 486.5 696 44.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 9.1e-115 419.1 693 37.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.2e-113 414.5 252 84.1
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.1e-112 412.1 329 70.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 6.1e-111 406.4 734 34.7
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.8e-108 396.7 735 37.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.4e-102 378.6 469 44.3
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 8.3e-100 369.4 286 64.3
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.5e-96 357.8 489 45.8
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.5e-85 319.7 557 39.3
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 6.6e-81 306.6 266 57.9
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.8e-79 301.2 279 62.7
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.0e-70 270.8 201 65.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 9.2e-67 259.6 243 57.2
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-64 252.7 215 62.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.5e-64 251.5 234 55.6
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.0e-58 230.3 175 65.1
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.7e-44 185.7 132 67.4
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.7e-44 185.7 151 60.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.6e-42 179.1 157 58.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.1e-38 166.4 175 47.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 6.9e-38 163.7 312 36.9
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 4.5e-37 161.0 122 71.3
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.4e-35 156.0 114 60.5
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.3e-33 149.4 541 25.9
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 3.4e-29 134.8 122 66.4
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 4.5e-29 134.4 122 66.4
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.1e-22 113.2 191 38.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.1e-22 111.7 78 62.8
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 4.5e-21 107.8 574 23.3
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.3e-17 95.5 301 33.2
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.4e-11 73.6 42 83.3
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 3.9e-09 68.2 56 66.1
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 5.1e-09 67.8 61 50.8
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.4e-06 58.9 52 51.9


User provided reference genes

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