Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 7.2e-273 943.3 489 100.0
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 6.9e-199 697.6 514 74.1
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 1.5e-190 669.8 520 71.0
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 2.5e-188 662.5 520 69.6
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 1.8e-186 656.4 518 72.6
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 1.8e-186 656.4 518 72.6
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 2.8e-176 622.5 517 65.6
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 9.0e-175 617.5 518 66.2
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 8.5e-165 584.3 517 65.2
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 2.5e-164 582.8 517 65.0
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 1.2e-163 580.5 517 64.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 4.4e-161 572.0 499 64.9
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 1.4e-159 567.0 516 64.1
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 2.6e-153 546.2 542 57.7
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 5.6e-116 422.2 568 44.7
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 9.5e-116 421.4 579 45.4
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 1.6e-115 420.6 565 45.7
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.6e-115 420.6 565 45.7
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 1.4e-114 417.5 558 44.6
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 1.4e-114 417.5 583 44.6
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 1.8e-114 417.2 578 44.6
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 2.3e-114 416.8 572 44.9
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 2.9e-112 409.8 598 42.8
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 3.7e-112 409.5 563 46.2
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 1.2e-110 404.4 560 44.5
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 3.9e-109 399.4 575 44.7
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 5.1e-109 399.1 579 44.0
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 1.1e-108 397.9 563 45.1
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 1.9e-108 397.1 564 43.4
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 3.3e-108 396.4 566 43.8
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 9.5e-108 394.8 564 45.0
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 8.9e-106 388.3 604 43.0
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 9.9e-105 384.8 571 43.1
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 2.9e-104 383.3 560 42.5
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 3.7e-104 382.9 562 42.3
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 2.4e-103 380.2 574 43.4
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 2.7e-102 376.7 537 42.1
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 3.5e-102 376.3 532 43.0
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 5.6e-100 369.0 555 43.1
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 4.7e-99 365.9 581 43.4
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 4.4e-97 359.4 547 41.7
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 8.4e-96 355.1 573 40.7
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 1.4e-95 354.4 478 43.7
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 1.6e-94 350.9 561 41.4
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 1.6e-94 350.9 552 40.8
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 1.3e-93 347.8 529 41.2
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 1.4e-90 337.8 565 40.5
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 2.6e-89 333.6 549 41.5
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 3.4e-89 333.2 534 41.8
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 4.5e-89 332.8 656 36.1
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 4.9e-88 329.3 410 49.0
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 4.9e-88 329.3 568 39.1
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 1.1e-87 328.2 518 40.5
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 4.2e-79 299.7 536 37.7
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 5.5e-79 299.3 535 37.8
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 5.5e-79 299.3 423 46.6
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.8e-77 294.3 554 38.8
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 6.7e-77 292.4 393 44.5
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 3.3e-76 290.0 559 36.0
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 1.6e-75 287.7 424 43.6
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 1.4e-74 284.6 539 37.7
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 2.4e-74 283.9 502 40.0
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 9.0e-74 282.0 541 36.8
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 9.0e-74 282.0 374 44.7
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 1.2e-73 281.6 384 46.1
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.2e-73 281.6 384 45.3
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.2e-72 277.3 394 45.7
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 4.9e-72 276.2 563 35.7
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 1.9e-71 274.2 395 45.8
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 2.5e-71 273.9 380 44.5
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 1.2e-70 271.6 349 47.3
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 2.7e-70 270.4 388 44.6
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 3.5e-70 270.0 407 42.0
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 7.9e-70 268.9 392 42.3
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 7.9e-70 268.9 349 47.0
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 1.3e-69 268.1 349 46.7
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 1.1e-68 265.0 370 47.3
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.1e-66 258.5 369 44.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.1e-66 256.5 315 49.2
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 9.0e-66 255.4 354 43.2
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 1.2e-65 255.0 281 52.0
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 2.6e-65 253.8 297 50.5
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 2.6e-65 253.8 496 38.3
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 6.5e-64 249.2 354 43.8
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 1.4e-63 248.1 399 42.4
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.2e-62 245.0 365 43.6
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 1.6e-62 244.6 353 43.9
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 2.7e-62 243.8 366 41.8
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 3.6e-62 243.4 337 47.5
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 4.6e-62 243.0 391 41.7
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 3.0e-61 240.4 321 46.7
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 8.7e-61 238.8 390 41.0
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 1.1e-60 238.4 410 38.5
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 1.5e-60 238.0 378 41.0
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 2.5e-60 237.3 332 45.2
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 2.9e-56 223.8 345 42.6
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 1.1e-55 221.9 371 39.9
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 3.6e-54 216.9 369 39.8
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 3.9e-53 213.4 342 41.5
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 3.9e-53 213.4 383 37.9
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 9.7e-52 208.8 390 36.9
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 8.5e-48 195.7 280 43.2
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 9.7e-44 182.2 316 38.6
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 8.2e-43 179.1 329 36.5
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 2.0e-41 174.5 558 28.5
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 2.9e-40 170.6 157 54.8
CSS0040532 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 1.0e-37 162.2 232 41.4
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 7.5e-36 156.0 607 27.3
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 7.5e-36 156.0 207 43.0
Atru.chr12.960 Acer truncatum HOM05D005759 ORTHO05D007172 2.2e-35 154.5 192 47.4
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 5.9e-33 146.4 141 50.4
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 5.2e-29 133.3 211 36.0
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 5.7e-28 129.8 227 38.8
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 7.5e-28 129.4 207 35.7
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 4.5e-25 120.2 593 23.9
Ciclev10033771m.g Citrus clementina HOM05D005759 ORTHO05D007172 8.8e-21 105.9 146 39.0
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 2.4e-18 97.8 97 50.5
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 5.4e-18 96.7 279 29.7
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 4.7e-14 83.6 274 28.1
Ca_11764_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 1.0e-13 82.4 89 44.9
Gorai.011G232400 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.3e-11 75.5 81 48.1
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 2.4e-10 71.2 191 32.5
CARHR131580 Cardamine hirsuta HOM05D005759 ORTHO05D007172 7.0e-10 69.7 45 71.1
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 2.7e-09 67.8 40 70.0
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 1.7e-08 65.1 75 42.7
Phvul.002G133300 Phaseolus vulgaris HOM05D000032 ORTHO05D007444 1.1e-07 62.4 311 24.8
VMungo1215G3152 Vigna mungo HOM05D000032 ORTHO05D007444 1.1e-07 62.4 311 24.8
Psat2g139400 Pisum sativum HOM05D000032 ORTHO05D007444 1.5e-07 62.0 357 23.8
arahy.Tifrunner.gnm1.ann1.61HMI4 Arachis hypogaea HOM05D000032 ORTHO05D007444 1.9e-07 61.6 357 22.1
arahy.Tifrunner.gnm1.ann1.ZA5ISV Arachis hypogaea HOM05D000032 ORTHO05D007444 1.9e-07 61.6 357 22.1
Migut.E01328 Erythranthe guttata HOM05D000032 ORTHO05D007444 1.9e-07 61.6 362 24.6
TWI81G0473 Tripterygium wilfordii HOM05D000032 ORTHO05D007444 1.9e-07 61.6 357 22.4
Medtr5g027840 Medicago truncatula HOM05D000032 ORTHO05D007444 2.5e-07 61.2 357 23.8
Hund11148 Selenicereus undatus HOM05D000032 ORTHO05D007444 2.5e-07 61.2 356 23.0
CiPaw.11G100700 Carya illinoinensis HOM05D000032 ORTHO05D007444 3.3e-07 60.8 452 23.0
SEGI_15594 Sequoiadendron giganteum HOM05D000032 ORTHO05D007444 4.3e-07 60.5 370 24.6
Duzib068G1248 Durio zibethinus HOM05D000032 ORTHO05D007444 5.6e-07 60.1 413 22.8
Ca_25155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007444 7.3e-07 59.7 357 23.0
Os07g0301200 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007444 9.5e-07 59.3 363 24.5
PSO063G7107 Papaver somniferum HOM05D000032 ORTHO05D007444 2.1e-06 58.2 358 23.2
PSO782G4822 Papaver somniferum HOM05D000032 ORTHO05D007444 2.1e-06 58.2 362 25.1
Eucgr.G02716 Eucalyptus grandis HOM05D005759 ORTHO05D007172 3.6e-06 57.4 63 47.6
Glyma.01G010400 Glycine max HOM05D000032 ORTHO05D007444 4.7e-06 57.0 367 23.2
Peaxi162Scf00244g00112 Petunia axillaris HOM05D005759 ORTHO05D007172 4.7e-06 57.0 122 37.7
Glyma.09G210700 Glycine max HOM05D000032 ORTHO05D007444 8.0e-06 56.2 367 23.2
Lalb_Chr16g0380911 Lupinus albus HOM05D000032 ORTHO05D007444 8.0e-06 56.2 360 22.5


User provided reference genes

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