Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 2140.5 1132 100.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1962.6 1132 91.8
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1914.8 1135 89.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1899.8 1135 88.1
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1898.6 1138 88.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1896.7 1135 89.1
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1896.3 1137 88.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1893.6 1137 89.1
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1893.2 1136 88.3
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1885.9 1141 88.6
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1836.6 1133 85.2
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1828.5 1085 88.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1811.2 1084 87.9
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1805.8 1085 87.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1799.6 1085 87.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1785.8 1084 87.0
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1760.7 1077 86.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1680.6 1133 79.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1638.2 1138 76.8
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1563.5 934 87.3
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1420.6 1131 67.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1410.2 1144 65.7
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1408.3 1149 65.4
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1405.6 1140 66.2
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1401.3 1143 66.1
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1394.0 1141 64.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1393.6 1150 65.0
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1392.9 1131 66.0
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1391.7 1131 67.4
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1391.3 1146 64.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1384.8 1145 65.0
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1382.5 1136 65.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1380.5 1163 64.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1380.5 1143 64.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1378.2 1143 66.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1377.8 1138 65.0
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1140 64.1
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1370.1 1129 65.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1140 64.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1364.4 1131 65.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1363.2 1152 64.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1138 64.4
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1360.5 1142 64.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1354.0 1130 64.3
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1350.9 1154 63.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1350.5 1136 64.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1349.0 1137 65.3
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1152 63.1
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1341.3 1148 63.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1340.9 1145 63.7
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1338.2 1145 62.7
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1337.8 1150 63.2
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1336.2 1146 63.9
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1333.2 1131 64.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1332.8 1145 63.4
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1329.3 1131 63.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1328.2 1131 63.4
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1324.7 1141 63.5
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1320.4 1142 62.1
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1129 63.6
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1313.9 1169 62.4
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1309.7 1130 63.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1302.0 1146 61.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1279.2 1146 61.0
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1267.7 1129 61.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1266.5 1116 61.6
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1248.4 789 86.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1245.3 1193 57.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1236.9 1084 62.0
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1232.2 1123 62.7
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1228.8 1113 59.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1224.2 1163 59.1
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1223.4 1113 61.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1219.9 1154 58.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1216.4 1099 59.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1215.3 1142 59.4
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1215.3 1102 60.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1212.6 1155 58.2
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1208.4 1099 59.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1207.6 1146 58.9
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1197.2 1154 58.0
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1196.8 1140 58.2
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1187.6 895 75.9
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1185.2 1080 60.0
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1150.6 931 65.0
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1149.8 1022 63.0
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1146.3 930 64.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1145.6 1128 56.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1142.5 1089 58.0
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1113.6 1291 51.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1098.6 1085 55.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1096.6 1090 56.8
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1086.6 1092 56.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 7.7e-312 1074.3 1143 54.8
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.8e-306 1056.2 1362 48.2
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 8.5e-301 1037.3 1023 57.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.1e-299 1032.7 1046 55.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.3e-293 1013.4 965 60.3
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.0e-285 984.9 1104 51.4
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.2e-284 981.9 1137 51.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.4e-265 918.7 1033 53.3
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 2.5e-260 902.9 934 55.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.0e-250 869.0 895 57.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.7e-246 856.3 1041 49.8
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 1.3e-216 757.7 1133 40.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.1e-211 738.4 1134 39.8
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.2e-209 734.6 1078 40.8
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.5e-209 732.6 1087 40.8
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.3e-208 731.1 903 50.8
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 6.4e-208 728.8 699 57.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 7.1e-207 725.3 1100 39.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-195 687.6 801 52.6
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.4e-191 674.5 989 45.4
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.2e-187 658.7 1041 38.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.4e-183 645.2 523 63.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 6.3e-179 632.5 685 52.4
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 6.3e-171 605.9 650 54.5
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.3e-168 598.2 523 60.4
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 7.2e-159 565.8 431 69.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.1e-158 564.3 438 69.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 8.9e-149 532.3 523 55.3
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 9.2e-130 469.2 485 58.8
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.6e-110 404.1 413 57.4
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-103 382.5 355 60.0
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.8e-101 375.2 661 39.8
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 5.3e-101 373.6 227 77.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.9e-95 355.1 842 32.7
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.9e-90 338.6 365 53.2
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.4e-85 322.4 351 48.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 3.4e-84 317.8 189 76.2
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.4e-77 295.8 225 72.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 5.3e-77 293.9 1046 25.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.1e-73 280.4 242 64.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.8e-72 278.9 381 45.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.4e-69 269.2 260 59.6
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 2.3e-64 251.9 1234 22.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 3.9e-64 251.1 193 67.4
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.3e-62 246.1 143 81.8
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.4e-61 242.7 140 80.7
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.1e-61 241.5 198 58.6
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 7.7e-60 236.9 565 33.5
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.0e-59 236.5 140 78.6
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.0e-52 212.2 145 79.3
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.2e-48 197.6 543 33.0
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 6.8e-48 197.2 119 77.3
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 4.8e-46 191.0 121 75.2
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.4e-45 187.6 117 75.2
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.8e-38 165.2 132 60.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 9.2e-37 160.2 153 58.8
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-36 159.5 134 66.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 7.7e-36 157.1 1157 20.1
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.6e-35 153.7 178 55.6
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.6e-35 153.7 178 55.6
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.0e-32 146.7 83 80.7
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.0e-32 146.7 82 82.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.0e-32 146.7 144 61.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 5.2e-32 144.4 129 59.7
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.5e-31 142.9 82 79.3
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 5.4e-29 134.4 176 46.0
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.9e-27 128.3 117 54.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.5e-26 126.3 201 46.3
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.5e-26 123.6 144 54.9
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 8.9e-24 117.1 141 53.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.2e-22 112.5 161 46.6
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 85 58.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-18 100.1 103 52.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.3e-18 98.2 95 54.7
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 9.5e-18 97.1 122 47.5
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.6e-17 96.3 119 47.9
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.9e-14 85.5 129 48.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.4e-13 82.4 73 47.9
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 4.6e-12 78.2 80 55.0
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.0e-11 77.0 95 52.6
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.6e-07 60.8 43 62.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 7.6e-07 60.8 45 62.2


User provided reference genes

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