Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g09660 Schrenkiella parvula HOM05D044450 ORTHO05D031430 3.0e-94 348.6 186 100.0
Carub.0004s2645 Capsella rubella HOM05D001637 ORTHO05D002178 1.5e-16 90.5 54 81.5
BcaC01g05205 Brassica carinata HOM05D001637 ORTHO05D002178 3.3e-16 89.4 48 89.6
A03p24580 Brassica napus HOM05D001637 ORTHO05D002178 3.3e-16 89.4 48 89.6
C03p29310 Brassica napus HOM05D001637 ORTHO05D002178 3.3e-16 89.4 48 89.6
BolC3t15277H Brassica oleracea HOM05D001637 ORTHO05D002178 3.3e-16 89.4 48 89.6
BraA03t11664Z Brassica rapa HOM05D001637 ORTHO05D002178 3.3e-16 89.4 48 89.6
CARHR139090 Cardamine hirsuta HOM05D001637 ORTHO05D002178 2.1e-15 86.7 54 74.1
BcaB01g02309 Brassica carinata HOM05D001637 ORTHO05D031430 4.7e-15 85.5 54 77.8
BcaB01g03352 Brassica carinata HOM05D001637 ORTHO05D002178 4.7e-15 85.5 54 77.8
AL4G42770 Arabidopsis lyrata HOM05D001637 ORTHO05D002178 6.1e-15 85.1 54 77.8
Thhalv10001286m.g Eutrema salsugineum HOM05D001637 ORTHO05D002178 8.0e-15 84.7 54 77.8
AL2G19080 Arabidopsis lyrata HOM05D044450 ORTHO05D031430 1.4e-14 84.0 80 58.8
Aa31LG1G25610 Aethionema arabicum HOM05D001637 ORTHO05D002178 1.8e-14 83.6 54 74.1
AT2G43900 Arabidopsis thaliana HOM05D001637 ORTHO05D002178 4.0e-14 82.4 55 76.4
THA.LOC104804266 Tarenaya hassleriana HOM05D001637 ORTHO05D002178 3.7e-12 75.9 52 75.0
Thecc.05G002100 Theobroma cacao HOM05D001637 ORTHO05D002178 3.7e-12 75.9 51 72.5
Duzib093G0407 Durio zibethinus HOM05D001637 ORTHO05D002178 4.1e-11 72.4 55 69.1
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 2.7e-10 69.7 54 64.8
GSVIVG01038245001 Vitis vinifera HOM05D001637 ORTHO05D002178 1.3e-09 67.4 47 68.1
Potri.017G006900 Populus trichocarpa HOM05D001637 ORTHO05D002178 1.7e-09 67.0 53 64.2
Cpa.g.sc3383.1 Carica papaya HOM05D001637 ORTHO05D002178 2.3e-09 66.6 50 66.0
Potri.007G145100 Populus trichocarpa HOM05D001637 ORTHO05D002178 3.0e-09 66.2 53 62.3
TWI63G0714 Tripterygium wilfordii HOM05D001637 ORTHO05D002178 3.0e-09 66.2 55 61.8
Oeu022462.2 Olea europaea HOM05D001637 ORTHO05D002178 3.9e-09 65.9 42 73.8
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.9e-09 65.9 53 62.3
CiPaw.01G201100 Carya illinoinensis HOM05D001637 ORTHO05D002178 5.0e-09 65.5 53 62.3
Manes.01G019700 Manihot esculenta HOM05D001637 ORTHO05D002178 5.0e-09 65.5 56 60.7
TWI15G0544 Tripterygium wilfordii HOM05D001637 ORTHO05D002178 5.0e-09 65.5 52 63.5
TWI38G1488 Tripterygium wilfordii HOM05D001637 ORTHO05D002178 5.0e-09 65.5 55 60.0
Ah.13g073210 Amaranthus hybridus HOM05D001637 ORTHO05D002178 6.6e-09 65.1 47 68.1
Migut.G00861 Erythranthe guttata HOM05D001637 ORTHO05D002178 6.6e-09 65.1 45 66.7
unitig_8.g3616 Utricularia gibba HOM05D001637 ORTHO05D002178 6.6e-09 65.1 44 68.2
TAR365G1224 Trochodendron aralioides HOM05D001637 ORTHO05D002178 8.6e-09 64.7 44 68.2
SGA_v2.0_scaffold12G06215 Striga asiatica HOM05D001637 ORTHO05D002178 1.1e-08 64.3 44 65.9
THA.LOC104800930 Tarenaya hassleriana HOM05D001637 ORTHO05D002178 1.1e-08 64.3 47 61.7
Manes.05G136647 Manihot esculenta HOM05D001637 ORTHO05D002178 1.5e-08 63.9 56 58.9
Atru.chr11.2348 Acer truncatum HOM05D001637 ORTHO05D002178 1.9e-08 63.5 55 63.6
EL10Ac3g06157 Beta vulgaris HOM05D001637 ORTHO05D002178 1.9e-08 63.5 46 69.6
Ciclev10024293m.g Citrus clementina HOM05D001637 ORTHO05D002178 1.9e-08 63.5 51 62.7
AUR62002467 Chenopodium quinoa HOM05D001637 ORTHO05D002178 2.5e-08 63.2 45 68.9
AUR62023722 Chenopodium quinoa HOM05D001637 ORTHO05D002178 2.5e-08 63.2 45 68.9
Sc13g0007530 Simmondsia chinensis HOM05D001637 ORTHO05D002178 2.5e-08 63.2 41 70.7
Sc19g0002360 Simmondsia chinensis HOM05D001637 ORTHO05D002178 2.5e-08 63.2 47 63.8
Gohir.A09G169200 Gossypium hirsutum HOM05D001637 ORTHO05D002178 3.3e-08 62.8 52 65.4
Gohir.D09G164900 Gossypium hirsutum HOM05D001637 ORTHO05D002178 3.3e-08 62.8 52 65.4
Gorai.006G186700 Gossypium raimondii HOM05D001637 ORTHO05D002178 3.3e-08 62.8 52 65.4
Hund22583 Selenicereus undatus HOM05D001637 ORTHO05D002178 3.3e-08 62.8 44 68.2
CiPaw.02G124500 Carya illinoinensis HOM05D001637 ORTHO05D002178 4.3e-08 62.4 52 63.5
Nitab4.5_0003520g0040 Nicotiana tabacum HOM05D001637 ORTHO05D002178 5.6e-08 62.0 44 65.9
Sabra07G0115800 Salix brachista HOM05D001637 ORTHO05D002178 5.6e-08 62.0 53 58.5
Ah.07g203180 Amaranthus hybridus HOM05D001637 ORTHO05D002178 7.3e-08 61.6 44 65.9
A10p04390 Brassica napus HOM05D001637 ORTHO05D002178 7.3e-08 61.6 47 61.7
BraA10t42706Z Brassica rapa HOM05D001637 ORTHO05D002178 7.3e-08 61.6 47 61.7
Cfa008509 Carpinus fangiana HOM05D001637 ORTHO05D002178 7.3e-08 61.6 48 66.7
Hund12318 Selenicereus undatus HOM05D001637 ORTHO05D002178 7.3e-08 61.6 44 63.6
Lj5g0011951 Lotus japonicus HOM05D001637 ORTHO05D002178 9.5e-08 61.2 48 66.7
Phvul.003G074300 Phaseolus vulgaris HOM05D001637 ORTHO05D002178 9.5e-08 61.2 49 67.3
unitig_899.g14859 Utricularia gibba HOM05D001637 ORTHO05D002178 9.5e-08 61.2 44 63.6
TAR362G0964 Trochodendron aralioides HOM05D001637 ORTHO05D002178 1.2e-07 60.8 60 53.3
VMungo1215G3136 Vigna mungo HOM05D001637 ORTHO05D002178 1.2e-07 60.8 46 69.6
Cc03_g16030 Coffea canephora HOM05D001637 ORTHO05D002178 1.6e-07 60.5 44 63.6
Prupe.7G062000 Prunus persica HOM05D001637 ORTHO05D002178 1.6e-07 60.5 48 64.6
BcaB03g13453 Brassica carinata HOM05D001637 ORTHO05D002178 2.1e-07 60.1 47 59.6
Nitab4.5_0000160g0110 Nicotiana tabacum HOM05D001637 ORTHO05D002178 2.1e-07 60.1 44 63.6
PGR042G2943 Punica granatum HOM05D001637 ORTHO05D002178 2.1e-07 60.1 54 55.6
TPR.G5980 Trifolium pratense HOM05D001637 ORTHO05D002178 2.1e-07 60.1 43 69.8
Haze_11141 Corylus avellana HOM05D001637 ORTHO05D002178 2.8e-07 59.7 48 64.6
Haze_11143 Corylus avellana HOM05D001637 ORTHO05D002178 2.8e-07 59.7 48 64.6
Glyma.17G000600 Glycine max HOM05D001637 ORTHO05D002178 2.8e-07 59.7 49 65.3
Psat4g001280 Pisum sativum HOM05D001637 ORTHO05D002178 2.8e-07 59.7 48 64.6
CSS0017449 Camellia sinensis var. sinensis HOM05D001637 ORTHO05D002178 3.6e-07 59.3 44 61.4
CSS0018268 Camellia sinensis var. sinensis HOM05D001637 ORTHO05D002178 3.6e-07 59.3 44 61.4
DCAR_023791 Daucus carota HOM05D001637 ORTHO05D002178 3.6e-07 59.3 40 65.0
Medtr6g092670 Medicago truncatula HOM05D001637 ORTHO05D002178 3.6e-07 59.3 45 66.7
PSO210G3675 Papaver somniferum HOM05D001637 ORTHO05D002178 3.6e-07 59.3 45 64.4
PSO761G0497 Papaver somniferum HOM05D001637 ORTHO05D002178 3.6e-07 59.3 45 64.4
arahy.Tifrunner.gnm1.ann1.64R1WB Arachis hypogaea HOM05D001637 ORTHO05D002178 4.7e-07 58.9 42 71.4
arahy.Tifrunner.gnm1.ann1.L486DL Arachis hypogaea HOM05D001637 ORTHO05D002178 4.7e-07 58.9 42 71.4
Dinv24755 Davidia involucrata HOM05D001637 ORTHO05D002178 4.7e-07 58.9 44 61.4
Glyma.07G273800 Glycine max HOM05D001637 ORTHO05D002178 4.7e-07 58.9 49 63.3
MD00G1087600 Malus domestica HOM05D001637 ORTHO05D002178 4.7e-07 58.9 55 58.2
Nn3g18677 Nelumbo nucifera HOM05D001637 ORTHO05D002178 4.7e-07 58.9 48 58.3
Nn4g24917 Nelumbo nucifera HOM05D001637 ORTHO05D002178 4.7e-07 58.9 46 54.3
AL4G27090 Arabidopsis lyrata HOM05D001637 ORTHO05D002178 6.2e-07 58.5 45 62.2
AT2G31830 Arabidopsis thaliana HOM05D001637 ORTHO05D002178 6.2e-07 58.5 45 62.2
Carub.0001s0497 Capsella rubella HOM05D001637 ORTHO05D002178 6.2e-07 58.5 47 57.4
MBI03_g34781_MAGBIO Magnolia biondii HOM05D001637 ORTHO05D002178 6.2e-07 58.5 44 61.4
Oeu064016.1 Olea europaea HOM05D001637 ORTHO05D002178 6.2e-07 58.5 44 61.4
Solyc12g019080.3 Solanum lycopersicum HOM05D001637 ORTHO05D002178 6.2e-07 58.5 45 62.2
Sopen12g009280 Solanum pennellii HOM05D001637 ORTHO05D002178 6.2e-07 58.5 45 62.2
BcaB02g06834 Brassica carinata HOM05D001637 ORTHO05D002178 8.0e-07 58.2 47 57.4
vmacro00719 Vaccinium macrocarpon HOM05D001637 ORTHO05D002178 8.0e-07 58.2 44 59.1
Aqoxy3G04286 Aquilegia oxysepala HOM05D001637 ORTHO05D002178 1.1e-06 57.8 44 63.6
AL1G15540 Arabidopsis lyrata HOM05D001637 ORTHO05D002178 1.1e-06 57.8 47 57.4
QL10p064097 Quercus lobata HOM05D001637 ORTHO05D002178 1.1e-06 57.8 45 64.4
PGSC0003DMG400020375 Solanum tuberosum HOM05D001637 ORTHO05D002178 1.1e-06 57.8 39 69.2
Ca_13544_v3 Cicer arietinum L. HOM05D001637 ORTHO05D002178 1.4e-06 57.4 45 64.4
ClCG11G013020 Citrullus lanatus HOM05D001637 ORTHO05D002178 1.4e-06 57.4 48 60.4
Atru.chr3.2002 Acer truncatum HOM05D001637 ORTHO05D002178 1.8e-06 57.0 84 44.0
BraA08t35541Z Brassica rapa HOM05D001637 ORTHO05D002178 1.8e-06 57.0 47 55.3
Carub.0004s1313 Capsella rubella HOM05D001637 ORTHO05D002178 1.8e-06 57.0 44 61.4
CARHR005130 Cardamine hirsuta HOM05D001637 ORTHO05D002178 1.8e-06 57.0 47 55.3
PSO063G2719 Papaver somniferum HOM05D001637 ORTHO05D002178 1.8e-06 57.0 42 61.9
Sc09g0001290 Simmondsia chinensis HOM05D001637 ORTHO05D002178 1.8e-06 57.0 51 54.9
Solyc08g014580.4 Solanum lycopersicum HOM05D001637 ORTHO05D002178 1.8e-06 57.0 44 59.1
Sopen08g005570 Solanum pennellii HOM05D001637 ORTHO05D002178 1.8e-06 57.0 44 59.1
PGSC0003DMG400025226 Solanum tuberosum HOM05D001637 ORTHO05D002178 1.8e-06 57.0 44 59.1
Ah.06g195140 Amaranthus hybridus HOM05D001637 ORTHO05D002178 2.3e-06 56.6 44 61.4
DCAR_027498 Daucus carota HOM05D001637 ORTHO05D002178 2.3e-06 56.6 46 56.5
Eucgr.A00431 Eucalyptus grandis HOM05D001637 ORTHO05D002178 2.3e-06 56.6 47 57.4
MBI06_g03972_MAGBIO Magnolia biondii HOM05D001637 ORTHO05D002178 2.3e-06 56.6 40 67.5
MSTRG.4552 Avicennia marina HOM05D001637 ORTHO05D002178 3.1e-06 56.2 44 59.1
A08p36370 Brassica napus HOM05D001637 ORTHO05D002178 3.1e-06 56.2 47 55.3
CDE04G1539 Ceratophyllum demersum HOM05D001637 ORTHO05D002178 3.1e-06 56.2 44 59.1
MD15G1143600 Malus domestica HOM05D001637 ORTHO05D002178 3.1e-06 56.2 48 60.4
HanXRQChr11g0343491 Helianthus annuus HOM05D001637 ORTHO05D002178 4.0e-06 55.8 39 64.1
Peaxi162Scf01205g00030 Petunia axillaris HOM05D001637 ORTHO05D002178 4.0e-06 55.8 44 56.8
Prupe.6G365800 Prunus persica HOM05D001637 ORTHO05D002178 4.0e-06 55.8 51 52.9
AT1G05630 Arabidopsis thaliana HOM05D001637 ORTHO05D002178 5.2e-06 55.5 47 53.2
BcaC05g24357 Brassica carinata HOM05D001637 ORTHO05D002178 5.2e-06 55.5 48 58.3
C05p03990 Brassica napus HOM05D001637 ORTHO05D002178 5.2e-06 55.5 48 58.3
BolC5t29177H Brassica oleracea HOM05D001637 ORTHO05D002178 5.2e-06 55.5 48 58.3
MELO3C011796.2 Cucumis melo HOM05D001637 ORTHO05D002178 5.2e-06 55.5 48 58.3
DCAR_005459 Daucus carota HOM05D001637 ORTHO05D002178 5.2e-06 55.5 46 58.7
Nitab4.5_0007944g0040 Nicotiana tabacum HOM05D001637 ORTHO05D002178 5.2e-06 55.5 44 56.8
Actinidia18401 Actinidia chinensis HOM05D001637 ORTHO05D002178 6.8e-06 55.1 44 54.5
BcaC07g36830 Brassica carinata HOM05D001637 ORTHO05D002178 6.8e-06 55.1 47 55.3
C08p02010 Brassica napus HOM05D001637 ORTHO05D002178 6.8e-06 55.1 47 55.3
BolC8t46999H Brassica oleracea HOM05D001637 ORTHO05D002178 6.8e-06 55.1 47 55.3
ECA248G3753 Erigeron canadensis HOM05D001637 ORTHO05D002178 6.8e-06 55.1 40 57.5
RcHm_v2.0_Chr7g0176851 Rosa chinensis HOM05D001637 ORTHO05D002178 6.8e-06 55.1 49 59.2
Sp1g04480 Schrenkiella parvula HOM05D001637 ORTHO05D002178 6.8e-06 55.1 47 53.2
Haze_24516 Corylus avellana HOM05D001637 ORTHO05D002178 8.9e-06 54.7 38 65.8
Sed0001925 Sechium edule HOM05D001637 ORTHO05D002178 8.9e-06 54.7 55 50.9
Solyc12g096660.3 Solanum lycopersicum HOM05D001637 ORTHO05D002178 8.9e-06 54.7 40 62.5


User provided reference genes

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