Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 6.4e-293 1010.0 496 100.0
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 2.1e-240 835.5 497 84.3
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 2.2e-237 825.5 495 83.6
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 7.9e-235 817.0 496 83.1
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 9.6e-233 810.1 496 81.9
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 1.3e-232 809.7 496 81.7
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 2.6e-209 732.3 499 77.8
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 2.6e-209 732.3 496 77.8
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 2.6e-209 732.3 496 77.8
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 5.3e-207 724.5 476 74.2
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 1.6e-206 723.0 500 72.6
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 3.5e-206 721.8 497 76.7
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 2.2e-205 719.2 497 76.3
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 6.1e-179 631.3 493 64.9
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 8.9e-178 627.5 498 63.9
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 6.4e-176 621.3 491 63.5
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 2.0e-174 616.3 501 63.3
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.7e-173 613.2 496 63.5
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 8.6e-173 610.9 506 61.7
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 1.5e-172 610.1 492 62.8
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 5.6e-172 608.2 493 62.9
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 9.5e-172 607.4 493 62.9
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.2e-171 607.1 491 62.5
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 2.1e-171 606.3 491 62.3
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 6.2e-171 604.7 493 62.7
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 2.3e-170 602.8 488 62.9
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 9.8e-169 597.4 499 61.5
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 9.8e-169 597.4 507 60.4
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 9.8e-169 597.4 496 61.3
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.7e-168 596.7 497 61.8
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 1.7e-168 596.7 497 60.8
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 2.9e-168 595.9 502 60.4
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 2.9e-168 595.9 497 60.8
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 4.9e-168 595.1 485 62.5
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 4.9e-168 595.1 502 60.4
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 2.4e-167 592.8 501 61.3
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 2.4e-167 592.8 494 61.3
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 4.1e-167 592.0 489 61.8
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 5.4e-167 591.7 474 62.0
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 2.0e-166 589.7 504 60.5
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 3.5e-166 589.0 474 61.8
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 3.0e-165 585.9 492 61.0
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 1.1e-164 583.9 494 60.9
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 1.5e-164 583.6 497 59.0
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.9e-164 583.2 496 59.5
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 3.3e-164 582.4 471 62.6
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 4.3e-164 582.0 498 59.4
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 1.2e-163 580.5 518 58.9
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.3e-162 576.2 474 62.0
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 2.3e-162 576.2 512 58.4
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 2.3e-162 576.2 545 57.1
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 3.1e-162 575.9 493 59.6
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 2.0e-161 573.2 486 60.3
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 7.5e-161 571.2 500 59.0
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 8.3e-160 567.8 495 59.0
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 1.1e-159 567.4 494 59.5
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 1.4e-159 567.0 495 58.8
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 4.6e-158 562.0 495 58.0
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 2.3e-157 559.7 493 58.0
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.9e-157 558.9 489 58.1
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 8.6e-157 557.8 527 57.1
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.1e-156 557.4 498 57.2
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 4.3e-156 555.4 507 57.8
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 4.3e-156 555.4 493 58.4
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 4.3e-156 555.4 507 55.6
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 7.3e-156 554.7 500 56.8
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 9.5e-156 554.3 505 56.6
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 1.2e-155 553.9 491 63.3
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 7.6e-153 544.7 486 57.6
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 7.6e-153 544.7 493 57.8
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 1.9e-151 540.0 494 56.3
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 2.4e-151 539.7 453 61.6
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 2.4e-151 539.7 462 60.8
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 9.2e-151 537.7 468 61.3
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 2.1e-150 536.6 508 56.7
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 4.6e-150 535.4 506 54.7
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 4.6e-150 535.4 495 55.6
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.5e-148 530.4 455 60.7
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 2.5e-148 529.6 504 56.5
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 5.6e-148 528.5 475 58.3
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 5.6e-148 528.5 480 56.7
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 1.2e-147 527.3 497 56.9
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.2e-147 527.3 450 60.4
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 1.6e-147 526.9 491 55.4
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.6e-147 526.9 419 62.3
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 2.4e-146 523.1 512 56.4
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 3.1e-146 522.7 492 56.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 2.0e-145 520.0 491 54.8
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 9.9e-145 517.7 490 54.7
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 2.2e-144 516.5 489 55.6
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 2.1e-142 510.0 493 55.0
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.7e-141 506.9 459 57.5
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 4.8e-139 498.8 514 52.1
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 4.3e-132 475.7 518 51.4
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 1.1e-130 471.1 475 52.4
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.4e-130 470.7 521 49.5
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.4e-130 470.7 521 49.5
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 5.5e-127 458.8 436 55.3
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.7e-120 437.2 563 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 6.0e-118 428.7 480 48.1
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 6.7e-117 425.2 497 49.1
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 3.8e-112 409.5 418 53.6
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 8.5e-112 408.3 547 43.0
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 9.3e-111 404.8 316 63.9
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 2.6e-105 386.7 352 58.0
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.6e-97 360.1 413 48.4
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 1.6e-94 350.9 499 42.1
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 8.8e-93 345.1 304 59.9
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 6.3e-91 339.0 277 63.9
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.9e-73 279.3 300 53.0
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.4e-61 241.5 394 37.3
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 4.9e-59 233.0 343 39.9
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.0e-57 227.6 146 72.6
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 2.1e-54 217.6 309 44.0
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 3.6e-46 190.3 714 25.4
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 1.2e-38 165.2 339 32.7
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 9.9e-36 155.6 146 54.1
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 9.2e-34 149.1 95 71.6
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 5.6e-23 113.2 124 52.4
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.8e-22 110.9 72 73.6
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.4e-18 97.8 140 42.1
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 3.8e-11 73.9 60 60.0
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 8.2e-06 56.2 43 60.5


User provided reference genes

Program Settings