Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-172 609.8 334 100.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.1e-151 537.3 338 89.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.5e-147 524.6 339 86.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-144 516.5 336 86.0
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.0e-141 506.1 335 88.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.6e-138 496.5 334 85.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.0e-138 494.6 335 83.9
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-137 493.4 335 83.6
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.3e-137 493.4 335 83.6
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.1e-137 491.5 335 83.3
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-127 459.9 334 82.0
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.1e-126 455.3 334 80.2
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.4e-125 452.2 334 81.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.6e-122 443.4 329 80.9
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 3.3e-120 435.6 329 79.9
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.7e-116 423.3 341 71.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-114 416.8 350 69.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-113 414.1 329 77.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.7e-112 408.3 348 69.0
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 4.1e-110 402.1 280 80.7
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.8e-105 386.7 348 62.6
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 4.0e-105 385.6 348 61.5
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.8e-105 384.4 348 62.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.0e-104 383.3 349 61.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 9.7e-104 380.9 348 61.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.4e-102 377.1 347 61.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.4e-102 376.3 348 60.6
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 9.1e-102 374.4 348 60.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.7e-101 372.9 348 61.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.5e-101 372.5 348 59.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.3e-100 370.5 348 59.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.2e-100 369.8 348 60.3
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.9e-100 369.4 340 60.9
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 6.5e-100 368.2 350 59.7
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.5e-100 368.2 348 60.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 8.5e-100 367.9 348 60.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.9e-99 366.7 348 60.1
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.5e-99 366.3 348 59.5
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.2e-99 365.9 348 58.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 7.2e-99 364.8 348 59.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.6e-98 363.6 338 60.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.1e-98 363.2 348 59.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.7e-98 362.1 343 59.5
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 6.1e-98 361.7 348 59.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.1e-98 361.7 348 59.2
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.1e-98 361.7 348 58.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.0e-98 361.3 348 58.6
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.0e-98 361.3 330 62.1
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.0e-97 360.9 348 57.8
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-97 360.5 348 58.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.4e-97 360.5 348 58.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.8e-97 360.1 348 58.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.0e-97 359.4 338 59.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 5.2e-97 358.6 372 56.5
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.2e-96 357.5 348 59.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 348 58.6
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.6e-96 356.3 338 59.2
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.6e-96 356.3 348 58.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.4e-96 355.9 348 58.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.7e-96 355.1 332 64.2
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.7e-96 355.1 348 59.8
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.8e-95 352.8 341 60.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.8e-95 352.8 348 58.6
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.8e-95 352.8 348 58.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.8e-94 350.1 348 58.0
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.4e-94 349.7 318 61.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 9.1e-94 347.8 348 58.3
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.2e-93 347.4 344 57.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.6e-93 347.1 348 57.5
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.6e-93 347.1 348 55.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.0e-93 346.7 345 57.1
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.5e-93 345.9 348 58.6
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 7.7e-93 344.7 349 58.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-92 344.0 348 56.9
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.7e-92 343.6 348 57.2
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.9e-92 342.8 316 62.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.2e-91 339.3 348 56.6
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 7.2e-91 338.2 334 59.3
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.3e-89 333.2 344 57.3
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 3.0e-89 332.8 348 55.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.4e-88 329.3 343 55.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.2e-87 326.6 341 56.0
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 8.3e-87 324.7 343 54.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.1e-86 324.3 348 54.9
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.1e-86 322.8 348 54.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.1e-86 322.8 287 61.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.0e-86 321.6 348 53.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 9.2e-86 321.2 348 52.9
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.5e-85 319.3 338 56.5
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-85 318.9 348 54.3
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.0e-84 317.8 310 62.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.7e-84 317.0 322 56.5
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 2.9e-84 316.2 348 54.3
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.3e-83 312.8 348 53.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 7.3e-83 311.6 348 53.2
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.6e-82 310.5 349 53.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.1e-82 308.5 344 54.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.4e-81 307.4 333 54.7
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.8e-81 305.1 344 53.2
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 4.4e-80 302.4 338 54.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.8e-80 301.2 344 51.7
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.7e-79 300.4 348 52.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.9e-79 298.9 327 54.4
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.1e-78 297.7 397 47.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.4e-78 296.6 328 56.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.4e-78 296.6 348 52.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.2e-78 296.2 348 51.1
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.2e-78 296.2 348 51.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.0e-76 291.2 348 49.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.3e-76 290.8 334 52.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.7e-76 290.4 344 52.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.7e-76 290.4 348 50.6
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.7e-76 290.4 335 52.2
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.3e-75 285.8 341 49.3
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.1e-74 283.5 348 50.0
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.3e-73 280.0 331 51.7
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.2e-72 277.7 317 51.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.6e-72 276.6 343 48.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.4e-72 276.2 332 51.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 6.4e-71 271.9 333 50.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 6.4e-71 271.9 348 47.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.1e-70 271.2 292 53.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.4e-70 270.8 292 52.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.4e-70 268.9 283 56.5
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 9.2e-70 268.1 348 50.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.2e-69 267.7 369 45.8
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 7.8e-69 265.0 348 47.7
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.0e-68 263.1 348 47.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 5.0e-68 262.3 262 55.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 6.6e-68 261.9 340 48.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.5e-67 260.0 290 51.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.6e-67 258.8 332 49.4
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 8.1e-66 255.0 346 47.7
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 6.8e-65 251.9 333 48.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-64 250.8 348 47.1
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.9e-63 246.5 306 50.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 8.3e-63 245.0 270 55.2
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-62 244.2 271 56.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.2e-62 243.0 259 57.1
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 3.2e-62 243.0 281 52.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 3.0e-60 236.5 289 52.6
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.6e-58 230.7 325 46.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.1e-57 226.5 285 54.7
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.2e-56 224.6 341 42.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.2e-55 220.3 349 43.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.9e-55 219.2 321 43.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.4e-55 218.4 298 46.6
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.1e-51 208.0 348 40.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 7.3e-51 205.3 138 81.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 5.8e-48 195.7 345 39.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 9.9e-48 194.9 263 44.9
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.4e-46 191.0 309 45.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.4e-46 191.0 343 38.8
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 7.1e-46 188.7 279 49.8
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.0e-44 184.9 227 49.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 8.7e-44 181.8 219 49.3
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.8e-42 176.8 348 38.2
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 6.9e-41 172.2 295 46.8
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 9.0e-41 171.8 295 39.7
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 7.6e-40 168.7 337 33.8
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-37 160.2 158 59.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.5e-37 159.8 139 61.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.0e-36 156.8 338 34.6
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 5.1e-36 156.0 279 45.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 5.1e-36 156.0 279 45.2
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 7.4e-35 152.1 176 51.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.2e-31 140.6 330 30.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 6.2e-26 122.5 304 39.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.5e-24 117.9 127 63.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.0e-24 117.5 168 42.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.1e-22 109.0 145 46.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.1e-19 101.7 111 61.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.1e-14 85.1 55 81.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.6e-13 81.3 54 79.6
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 7.4e-11 72.4 132 47.7
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 1.8e-09 67.8 125 44.8
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 1.3e-07 61.6 125 42.4


User provided reference genes

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