Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 6.7e-171 604.0 316 100.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.8e-160 569.3 316 92.4
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 5.9e-159 564.3 316 91.1
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.3e-158 563.1 316 90.8
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 7.2e-157 557.4 316 89.9
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 7.2e-157 557.4 316 90.2
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 7.2e-157 557.4 316 90.2
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.6e-156 556.2 316 89.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.5e-154 549.7 299 92.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.6e-154 548.9 299 92.6
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.6e-154 548.9 299 92.6
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.3e-154 548.5 299 92.3
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.0e-151 539.3 316 87.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 3.2e-149 531.9 301 87.4
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 8.0e-148 527.3 314 85.0
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 5.2e-147 524.6 316 85.1
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.5e-143 511.5 315 83.2
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.7e-140 502.3 314 81.5
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 6.3e-137 491.1 316 76.6
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.4e-130 468.4 313 74.1
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.7e-130 468.0 316 72.5
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.2e-129 466.1 313 73.2
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 4.8e-129 464.9 313 73.2
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 8.3e-129 464.2 313 72.2
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 1.4e-128 463.4 313 72.5
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 9.1e-128 460.7 311 72.0
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.7e-127 459.1 316 71.8
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 1.0e-126 457.2 316 70.6
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 1.7e-126 456.4 313 71.6
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 2.3e-126 456.1 313 71.2
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 5.0e-126 454.9 316 70.6
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 5.0e-126 454.9 316 70.6
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 8.6e-126 454.1 315 72.4
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.5e-125 453.4 311 71.7
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.5e-125 452.6 312 70.8
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 4.2e-125 451.8 314 69.7
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 7.2e-125 451.1 313 70.3
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.6e-124 449.9 316 69.3
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 4.7e-124 448.4 315 67.3
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 6.1e-124 448.0 313 70.3
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 6.1e-124 448.0 316 69.6
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.0e-124 447.6 312 70.2
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.0e-123 447.2 313 70.0
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 5.2e-123 444.9 316 70.3
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 8.9e-123 444.1 299 71.2
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.5e-122 443.4 315 69.5
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.0e-122 443.0 313 70.3
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 4.4e-122 441.8 314 68.5
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 4.4e-122 441.8 313 69.0
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.7e-121 439.9 316 68.0
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.7e-121 439.9 313 69.6
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.7e-121 439.9 315 68.6
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.1e-120 437.2 316 68.0
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.8e-120 436.4 314 67.5
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 4.1e-120 435.3 257 80.9
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.4e-120 434.9 314 67.5
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 7.0e-120 434.5 313 66.1
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 7.0e-120 434.5 312 67.3
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 7.0e-120 434.5 313 68.7
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 7.0e-120 434.5 313 68.1
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 9.2e-120 434.1 315 67.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 9.2e-120 434.1 314 65.9
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 9.2e-120 434.1 316 67.1
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.6e-119 433.3 315 66.7
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.6e-119 433.3 341 63.3
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.6e-119 433.3 313 68.1
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 3.5e-119 432.2 315 67.0
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 3.5e-119 432.2 315 68.6
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 3.5e-119 432.2 312 66.7
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.5e-119 432.2 314 67.2
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 4.5e-119 431.8 316 67.7
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 4.5e-119 431.8 315 66.7
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 5.9e-119 431.4 313 67.7
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 2.9e-118 429.1 313 66.5
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.9e-118 428.7 312 68.3
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 5.0e-118 428.3 315 65.7
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 6.6e-118 427.9 316 65.8
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.5e-117 426.8 315 67.6
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.3e-117 425.2 316 66.1
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 5.6e-117 424.9 315 65.4
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 5.6e-117 424.9 293 70.0
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-116 423.7 312 67.6
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.6e-116 423.3 312 67.6
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.6e-116 423.3 315 66.3
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.1e-116 422.9 312 64.4
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 4.7e-116 421.8 312 67.6
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 6.1e-116 421.4 308 66.9
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 6.1e-116 421.4 293 68.3
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.0e-115 420.6 325 65.2
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.0e-115 420.6 325 65.2
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.0e-115 420.6 325 65.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.8e-115 419.9 305 68.9
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 4.0e-115 418.7 312 66.7
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.5e-114 416.8 294 68.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-114 416.4 325 64.3
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.0e-114 416.4 309 66.0
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 3.4e-114 415.6 325 64.3
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 5.8e-114 414.8 292 68.2
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 7.5e-114 414.5 312 65.1
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.3e-113 413.7 313 64.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.9e-113 412.5 303 65.7
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.9e-113 412.5 312 65.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.7e-113 412.1 335 63.3
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.9e-113 411.8 343 60.1
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.6e-111 406.8 268 72.0
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.6e-111 406.8 316 64.6
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 1.0e-110 404.1 285 68.4
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.0e-110 404.1 291 67.0
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.3e-110 403.7 316 62.7
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.5e-109 399.4 309 64.4
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 5.6e-109 398.3 289 66.8
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.6e-108 396.7 309 63.4
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.4e-107 393.7 309 63.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.4e-106 388.7 316 62.0
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.3e-105 387.1 317 63.4
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.4e-104 383.6 317 63.1
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.8e-103 377.9 253 70.8
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.8e-103 377.9 326 62.0
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.4e-91 339.7 296 57.4
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.4e-88 330.5 313 55.3
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 5.4e-88 328.6 234 67.1
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 3.0e-86 322.8 316 53.5
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 3.9e-86 322.4 297 54.5
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.5e-85 320.5 298 54.0
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.6e-84 315.8 223 67.3
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.8e-84 315.5 228 67.1
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 5.4e-80 302.0 307 51.1
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.7e-79 299.7 312 51.6
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 9.0e-75 284.6 276 53.6
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.4e-72 277.3 290 51.0
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 4.6e-71 272.3 290 49.3
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 7.9e-63 245.0 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 5.8e-58 228.8 231 52.8
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 5.5e-48 195.7 300 39.3
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 3.4e-42 176.4 171 57.3
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.1e-38 162.5 107 71.0
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 1.1e-29 134.8 93 69.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 8.2e-28 128.6 94 68.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 3.2e-24 116.7 90 64.4
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 7.2e-24 115.5 90 72.2
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 7.2e-24 115.5 90 72.2
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.8e-20 103.6 79 65.8
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 5.0e-17 92.8 90 60.0
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 8.0e-15 85.5 116 43.1
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 2.8e-07 60.5 99 40.4


User provided reference genes

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