Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.4e-148 529.6 275 100.0
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.2e-137 491.9 276 92.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 5.5e-137 491.1 278 93.9
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.7e-134 481.1 276 92.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 3.7e-133 478.4 275 90.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 4.1e-132 474.9 277 91.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 4.5e-131 471.5 269 91.8
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-130 470.3 269 90.7
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.5e-129 464.5 277 89.9
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 2.1e-128 462.6 265 90.6
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-127 460.3 253 93.7
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.0e-127 458.8 282 86.5
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 5.2e-127 458.0 259 92.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.0e-126 456.1 280 87.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 4.8e-125 451.4 255 92.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.1e-124 448.7 267 89.5
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.1e-124 448.4 267 89.1
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 9.4e-121 437.2 269 85.1
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.7e-120 434.9 270 84.4
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-118 430.3 278 83.8
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 8.3e-117 424.1 277 82.3
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 4.1e-116 421.8 282 80.9
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.5e-115 418.7 268 82.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.0e-114 417.2 281 81.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.2e-114 416.0 280 78.2
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-105 386.3 249 81.5
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 5.5e-105 384.8 249 81.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 6.1e-104 381.3 249 80.3
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 6.1e-104 381.3 260 76.9
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 8.0e-104 380.9 260 76.5
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.8e-103 379.8 281 71.9
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 3.0e-103 379.0 286 72.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 8.9e-103 377.5 247 78.9
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 8.9e-103 377.5 214 88.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.2e-102 377.1 281 71.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.5e-102 376.7 286 72.0
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.6e-102 375.9 270 73.3
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.4e-102 375.2 286 72.4
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 5.7e-102 374.8 277 71.5
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 5.7e-102 374.8 281 73.0
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 9.8e-102 374.0 274 74.1
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 9.8e-102 374.0 275 72.0
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 9.8e-102 374.0 277 71.1
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 9.8e-102 374.0 220 85.5
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.7e-101 373.2 247 79.4
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.7e-101 373.2 281 73.0
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.9e-101 372.5 285 73.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 2.9e-101 372.5 286 71.0
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 4.9e-101 371.7 277 71.8
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 6.3e-101 371.3 238 79.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 8.3e-101 370.9 282 73.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 8.3e-101 370.9 278 71.9
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.8e-100 369.8 287 70.0
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.4e-100 369.4 220 84.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 2.4e-100 369.4 284 69.7
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.4e-100 369.4 277 71.8
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.4e-100 369.4 280 71.8
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.4e-100 369.4 247 78.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 7.0e-100 367.9 219 84.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 7.0e-100 367.9 235 80.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 7.0e-100 367.9 269 74.0
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 7.0e-100 367.9 280 70.4
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 9.2e-100 367.5 231 81.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 9.2e-100 367.5 282 69.5
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.6e-99 366.7 223 82.5
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 2.7e-99 365.9 277 70.0
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 3.5e-99 365.5 224 82.6
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.0e-98 364.0 274 69.3
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.0e-98 364.0 239 76.6
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.3e-98 363.6 247 78.5
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 5.0e-98 361.7 211 84.4
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 6.6e-98 361.3 281 69.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.6e-98 360.9 240 76.7
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.1e-97 360.5 204 85.3
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.1e-97 360.5 204 85.3
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.5e-97 360.1 222 82.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.5e-97 359.4 218 84.4
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 3.3e-97 359.0 214 84.6
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 4.3e-97 358.6 256 73.8
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 5.6e-97 358.2 204 84.8
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.6e-96 356.7 273 69.6
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.8e-96 355.9 220 80.0
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.6e-96 355.5 277 70.4
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.0e-95 354.0 207 82.1
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.3e-95 352.8 219 79.9
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 2.3e-95 352.8 198 86.4
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 2.3e-95 352.8 226 77.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.3e-95 352.8 281 68.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.1e-95 352.4 223 78.9
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 5.2e-95 351.7 234 78.6
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 5.2e-95 351.7 261 71.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.8e-95 351.3 269 70.3
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 8.9e-95 350.9 271 70.1
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 8.9e-95 350.9 270 68.9
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.5e-94 350.1 264 70.5
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.0e-94 349.7 272 68.0
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.6e-94 349.4 271 69.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-94 349.4 189 88.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 2.6e-94 349.4 225 77.8
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.4e-94 349.0 211 81.5
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 3.4e-94 349.0 198 85.4
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 3.4e-94 349.0 248 72.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.4e-94 348.6 269 69.9
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.9e-93 345.9 261 69.0
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 4.9e-93 345.1 228 75.4
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 6.4e-93 344.7 245 74.3
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 3.2e-92 342.4 224 76.3
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 5.4e-92 341.7 198 83.8
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 2.0e-91 339.7 275 68.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.0e-91 339.7 289 63.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 7.8e-91 337.8 268 68.7
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.3e-90 337.0 219 80.4
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 3.3e-89 332.4 251 68.5
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.3e-89 332.4 305 60.7
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 5.2e-87 325.1 223 74.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 5.8e-86 321.6 196 80.1
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 4.9e-85 318.5 286 66.1
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.4e-85 318.2 222 75.2
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 7.1e-84 314.7 276 65.2
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.5e-83 312.4 198 79.3
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 2.3e-82 309.7 166 89.8
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.1e-82 308.5 305 57.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.4e-79 300.4 273 62.6
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.3e-79 299.7 227 67.8
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 8.9e-79 297.7 166 88.0
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.9e-78 294.3 293 58.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.5e-75 285.8 170 81.8
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-74 282.3 238 64.7
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 8.6e-74 281.2 153 86.9
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.9e-73 280.0 222 64.4
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.7e-72 275.4 159 87.4
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 1.4e-71 273.9 180 75.0
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 8.9e-71 271.2 214 67.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.5e-70 270.4 194 68.6
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.7e-69 266.9 151 84.8
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-68 264.2 258 57.4
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-67 260.4 256 58.2
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.6e-67 260.4 243 59.7
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 4.6e-67 258.8 148 81.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.0e-67 258.5 149 85.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.0e-66 257.7 227 63.9
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 9.6e-65 251.1 169 76.9
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.6e-64 250.4 203 66.0
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.1e-63 247.7 242 57.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 6.0e-59 231.9 251 56.6
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.0e-58 229.6 167 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 8.7e-58 228.0 138 76.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 2.4e-55 219.9 250 45.6
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.5e-54 217.2 178 68.0
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 8.7e-50 201.4 182 62.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.0e-45 188.0 137 67.9
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.9e-45 186.4 331 39.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 6.3e-40 168.7 180 55.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.0e-38 163.7 188 43.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 9.3e-36 154.8 200 40.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.3e-33 146.0 222 39.2
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.9e-30 135.6 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-21 107.8 62 80.6
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 6.5e-21 105.5 62 79.0
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.6e-19 100.9 139 51.1
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 5.1e-18 95.9 59 78.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.5e-12 77.8 55 76.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-12 77.8 41 90.2
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.8e-10 70.9 68 57.4
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.8e-10 70.9 36 86.1
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.0e-10 69.7 36 83.3
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 6.7e-10 68.9 118 37.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.7e-10 68.9 39 84.6
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.3e-08 62.4 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.4e-07 60.5 42 64.3
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.6e-06 57.8 34 73.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.6e-06 57.8 109 36.7


User provided reference genes

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