Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 8.5e-91 337.0 176 100.0
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 4.2e-82 308.1 178 91.6
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 4.2e-82 308.1 178 91.6
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 3.6e-81 305.1 178 90.4
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.8e-80 302.8 179 89.4
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.8e-80 302.8 176 90.9
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 9.7e-79 297.0 176 89.2
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.0e-67 260.4 179 78.2
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.0e-67 260.4 179 78.2
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.0e-67 260.4 179 78.2
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.7e-67 259.6 179 79.9
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 5.0e-67 258.1 178 78.1
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 6.5e-67 257.7 179 79.3
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 6.5e-67 257.7 179 79.3
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 8.6e-67 257.3 178 77.0
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.9e-66 256.1 180 78.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.9e-66 256.1 180 76.7
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 7.2e-66 254.2 179 77.1
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 7.2e-66 254.2 179 78.2
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-65 252.7 179 78.8
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 2.1e-65 252.7 179 78.8
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 6.1e-65 251.1 162 81.5
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.0e-64 250.4 178 75.8
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.8e-64 249.6 175 76.6
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.2e-63 246.9 179 73.2
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 4.4e-63 245.0 166 79.5
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.2e-62 242.7 162 78.4
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.2e-62 242.7 162 78.4
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.8e-62 242.3 162 78.4
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 3.7e-62 241.9 179 73.7
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 6.3e-62 241.1 180 76.7
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 8.3e-62 240.7 162 76.5
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 9.2e-61 237.3 179 73.2
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 9.2e-61 237.3 157 79.0
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 2.7e-60 235.7 179 74.3
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 7.8e-60 234.2 162 77.8
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 7.8e-60 234.2 156 81.4
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.7e-59 233.0 178 71.3
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.7e-59 233.0 179 73.2
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.7e-59 233.0 179 73.7
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.9e-59 232.3 184 70.1
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.8e-59 231.9 157 76.4
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 3.8e-59 231.9 157 76.4
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 6.6e-59 231.1 130 86.2
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.6e-59 230.7 162 74.7
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.1e-58 230.3 179 69.3
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.9e-58 229.6 184 69.6
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.9e-58 229.6 184 69.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.9e-58 229.6 129 85.3
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.9e-58 229.6 129 85.3
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.5e-58 229.2 185 67.6
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 3.3e-58 228.8 160 74.4
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.3e-58 228.8 157 75.2
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 3.3e-58 228.8 181 69.6
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 3.3e-58 228.8 176 71.0
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 5.6e-58 228.0 179 74.9
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 9.5e-58 227.3 179 73.2
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 9.5e-58 227.3 162 73.5
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 9.5e-58 227.3 174 70.1
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.2e-57 226.9 130 84.6
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.6e-57 226.5 179 71.5
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.6e-57 225.3 166 72.3
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.6e-57 225.3 169 71.6
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 4.7e-57 224.9 165 73.9
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 6.1e-57 224.6 155 75.5
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 6.1e-57 224.6 184 67.9
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 8.0e-57 224.2 182 67.6
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.4e-56 223.4 155 72.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.4e-56 223.4 183 69.9
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.8e-56 223.0 181 69.6
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.3e-56 222.6 184 70.1
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 2.3e-56 222.6 168 69.6
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.0e-56 222.2 182 70.3
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 3.0e-56 222.2 151 74.8
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.0e-56 221.9 184 67.9
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 6.8e-56 221.1 180 68.9
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 8.9e-56 220.7 185 68.6
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.2e-55 220.3 185 67.0
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 2.0e-55 219.5 180 70.0
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 2.0e-55 219.5 191 68.1
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 2.6e-55 219.2 182 68.7
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 3.4e-55 218.8 175 66.3
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 7.5e-55 217.6 153 76.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 7.5e-55 217.6 161 69.6
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 183 66.7
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.7e-54 216.5 187 69.0
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 2.2e-54 216.1 153 74.5
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 3.7e-54 215.3 170 68.8
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.4e-53 213.4 180 67.2
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.4e-53 213.4 193 61.7
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 4.1e-53 211.8 181 66.9
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 5.4e-53 211.5 181 67.4
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 9.2e-53 210.7 180 68.9
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.2e-52 210.3 180 67.2
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.2e-52 210.3 176 65.9
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.0e-52 209.5 202 59.4
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 2.0e-52 209.5 160 71.9
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.7e-52 209.1 168 64.9
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.7e-52 209.1 129 79.1
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 3.5e-52 208.8 178 65.7
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 4.6e-52 208.4 176 62.5
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 5.9e-52 208.0 182 63.7
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.3e-51 206.8 182 67.0
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.3e-51 206.8 182 64.3
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.3e-51 206.8 167 64.1
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.9e-51 205.3 122 79.5
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 6.6e-51 204.5 169 62.7
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.6e-51 204.1 182 66.5
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 6.2e-49 198.0 178 63.5
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.8e-48 196.4 289 46.0
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 3.4e-47 192.2 140 66.4
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 5.8e-47 191.4 120 80.8
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.2e-46 189.5 289 44.3
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 2.9e-46 189.1 125 75.2
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 1.1e-45 187.2 181 60.2
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 3.2e-45 185.7 129 75.2
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 4.1e-45 185.3 153 68.0
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.8e-44 181.0 139 64.7
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.0e-43 180.6 163 61.3
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.5e-42 176.8 162 59.3
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 5.6e-42 174.9 163 58.9
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.4e-40 170.2 186 60.2
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 3.1e-40 169.1 185 53.5
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 6.8e-40 167.9 129 65.1
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.2e-39 167.2 214 52.8
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 9.9e-39 164.1 87 94.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.2e-38 162.9 178 58.4
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.7e-35 153.3 87 87.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.1e-35 151.8 100 81.0
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.2e-33 147.1 87 82.8
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 4.7e-33 145.2 117 56.4
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 5.8e-31 138.3 82 84.1
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 8.4e-30 134.4 82 80.5
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 8.7e-27 124.4 100 54.0
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 3.3e-26 122.5 82 76.8
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 3.1e-24 115.9 133 45.9
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 6.9e-24 114.8 87 71.3
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.5e-23 113.6 93 72.0
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.2e-21 105.9 93 69.9
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-15 86.3 54 81.5
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.3e-14 84.0 54 75.9
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.8e-14 82.4 67 58.2
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 8.7e-11 71.2 63 50.8
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.4e-08 63.2 47 66.0
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 1.2e-07 60.8 95 45.3
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.2e-07 60.8 95 44.2
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 2.6e-07 59.7 95 44.2
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 2.9e-06 56.2 93 47.3


User provided reference genes

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