Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 0.0e+00 1453.7 759 100.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.5e-258 895.2 734 68.4
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.1e-254 882.1 761 66.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.6e-253 879.0 742 67.7
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 5.8e-253 877.9 731 67.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-251 873.2 732 66.9
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 6.6e-249 864.4 734 67.3
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 5.2e-238 828.2 760 63.6
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 6.2e-231 804.7 724 63.5
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.6e-173 613.2 686 56.4
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.1e-147 528.1 799 45.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 5.4e-126 456.1 441 60.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 5.1e-124 449.5 540 51.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 5.1e-124 449.5 446 58.7
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.9e-123 447.6 481 56.5
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 7.6e-120 435.6 439 59.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 6.4e-119 432.6 445 58.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-117 428.3 448 56.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.1e-117 427.6 780 41.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.6e-117 426.4 453 56.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 7.8e-117 425.6 443 57.6
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-114 418.3 446 56.5
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.3e-113 412.9 437 56.3
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.3e-113 412.9 437 56.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.7e-84 315.8 586 36.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.8e-81 308.1 492 39.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.9e-81 306.2 454 44.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.9e-81 306.2 501 40.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.0e-81 305.8 466 40.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.4e-80 303.9 513 38.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.9e-79 300.8 607 36.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 5.0e-79 300.1 617 36.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.5e-79 299.3 460 40.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 8.5e-79 299.3 460 40.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.5e-78 297.7 685 35.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.7e-77 294.3 450 41.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.6e-77 293.5 568 36.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.0e-76 292.4 545 38.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.8e-76 291.6 512 40.4
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.1e-76 290.0 529 38.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.0e-75 288.1 513 38.4
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 9.7e-75 285.8 621 33.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 5.3e-73 280.0 570 36.8
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.9e-73 279.6 535 36.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.0e-72 278.1 515 37.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.0e-72 278.1 522 38.3
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 7.7e-72 276.2 516 36.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.7e-71 275.0 700 34.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.9e-71 274.2 602 35.4
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.8e-71 273.9 447 39.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 6.5e-71 273.1 472 38.1
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 6.5e-71 273.1 452 38.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-70 271.9 465 38.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.2e-70 270.8 561 36.0
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 7.2e-70 269.6 561 36.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 9.4e-70 269.2 474 38.0
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 2.7e-69 267.7 420 38.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.6e-69 267.3 477 37.7
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.4e-68 265.4 492 34.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.4e-68 265.4 463 36.1
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.4e-68 265.4 552 36.2
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 5.1e-68 263.5 645 32.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.7e-68 263.1 604 34.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 8.8e-68 262.7 626 32.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 8.8e-68 262.7 460 38.0
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.0e-67 261.5 556 33.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.6e-67 261.2 498 36.5
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.6e-67 261.2 519 35.3
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.3e-67 260.8 495 36.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.7e-67 260.0 421 39.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.4e-67 259.6 446 38.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 9.7e-67 259.2 449 36.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 9.7e-67 259.2 587 33.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 3.7e-66 257.3 627 34.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.4e-65 255.4 442 35.7
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.4e-65 255.4 450 36.2
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 9.1e-65 252.7 673 31.2
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.5e-64 251.9 533 34.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 5.9e-64 250.0 445 35.7
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-63 248.8 761 30.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.3e-63 248.8 459 35.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.5e-63 246.5 514 35.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.5e-63 246.1 636 32.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.5e-62 245.4 661 31.0
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.9e-62 245.0 560 32.5
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.5e-62 244.6 747 30.5
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.2e-62 244.2 639 32.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.2e-62 243.8 772 29.9
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.2e-62 243.8 427 36.5
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.2e-61 242.3 632 32.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.6e-61 241.9 413 36.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 8.0e-61 239.6 522 32.6
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 8.0e-61 239.6 790 30.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.0e-60 239.2 536 33.8
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.0e-60 239.2 433 37.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-60 238.4 648 32.3
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.3e-60 238.0 407 38.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 5.2e-60 236.9 634 31.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 6.7e-60 236.5 486 34.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.6e-59 234.6 610 32.0
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.3e-59 234.2 428 35.5
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 7.4e-59 233.0 497 34.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.7e-59 232.6 770 30.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.3e-58 232.3 438 34.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 4.8e-58 230.3 613 33.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-58 229.9 555 32.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.3e-57 226.9 503 32.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.6e-56 224.6 459 33.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.5e-56 224.2 481 33.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-56 224.2 455 34.1
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-55 221.5 484 32.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 5.0e-55 220.3 510 32.2
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.1e-54 219.2 444 35.1
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.9e-54 218.4 431 33.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 5.5e-54 216.9 513 29.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.2e-53 215.7 458 34.5
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.8e-52 211.8 425 34.1
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.3e-52 211.5 508 31.9
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.3e-52 211.5 422 32.9
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 8.3e-50 203.0 456 33.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.1e-49 202.6 407 32.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.7e-48 198.0 515 31.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.2e-46 190.7 378 33.6
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 4.7e-45 187.2 278 41.0
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.4e-43 181.0 365 34.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.8e-42 177.9 205 45.4
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.9e-42 177.2 774 27.8
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.9e-39 167.9 241 40.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 6.6e-39 166.8 451 31.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.8e-36 158.7 333 32.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.5e-35 155.6 254 43.3
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.4e-35 154.5 489 29.4
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 3.4e-35 154.5 723 26.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 7.0e-33 146.7 314 33.4
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.0e-31 142.9 272 34.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.2e-29 136.0 411 30.4
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.0e-28 132.9 419 28.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-26 125.9 192 38.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.7e-26 125.6 140 40.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 1.9e-25 122.1 179 48.0
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.2e-25 119.8 286 33.2
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-24 118.6 175 48.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-24 118.2 146 48.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-23 115.5 165 44.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-21 109.4 128 48.4
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 6.2e-21 107.1 80 68.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-20 106.3 109 50.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.3e-20 105.1 142 40.8
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 4.1e-17 94.4 168 43.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.0e-15 89.7 155 40.6
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-14 85.5 92 42.4
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-12 79.0 420 23.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.9e-11 73.2 96 35.4
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.1e-09 69.7 68 38.2
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.2e-09 68.2 70 54.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.2e-09 68.2 71 33.8
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 9.2e-09 66.6 372 21.5
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-07 60.1 78 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.9e-06 58.9 354 21.2


User provided reference genes

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