Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 0.0e+00 2002.3 1003 100.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 0.0e+00 1676.8 997 84.6
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 0.0e+00 1645.9 999 83.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 0.0e+00 1634.8 1010 82.5
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 0.0e+00 1578.5 1013 80.7
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 0.0e+00 1536.5 1012 79.0
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 0.0e+00 1517.3 1011 77.8
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 0.0e+00 1388.6 980 75.5
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 0.0e+00 1358.2 837 82.1
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 0.0e+00 1217.2 984 66.9
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 0.0e+00 1122.5 1031 59.7
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.6e-242 843.6 1112 45.0
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 1.2e-234 817.4 1159 42.7
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 3.3e-232 809.3 739 56.3
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 3.3e-232 809.3 1134 43.1
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.4e-230 803.9 1105 44.5
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 3.4e-229 799.3 1165 41.5
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 1.0e-225 787.7 831 50.7
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 2.6e-224 783.1 1122 43.5
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 9.7e-224 781.2 1093 42.6
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 1.7e-223 780.4 1099 44.2
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 1.5e-221 773.9 1102 42.6
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 2.6e-213 746.5 1015 42.7
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 2.9e-212 743.0 838 50.2
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 6.5e-212 741.9 1140 40.8
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 4.4e-208 729.2 1184 40.2
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 3.8e-204 716.1 1148 39.9
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 9.4e-203 711.4 753 50.7
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 2.7e-202 709.9 751 50.6
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 2.7e-202 709.9 1136 39.8
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 1.5e-200 704.1 843 46.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.0e-200 703.7 855 47.1
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 4.7e-194 682.6 857 44.6
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 1.0e-193 681.4 1163 38.3
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.0e-193 681.4 815 46.9
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.0e-193 681.4 836 47.1
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.4e-193 681.0 1118 38.2
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.8e-193 680.6 869 45.9
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.2e-193 679.1 733 50.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 4.1e-190 669.5 953 43.8
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 2.0e-189 667.2 841 44.8
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 3.5e-189 666.4 829 46.9
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 4.5e-189 666.0 1112 38.4
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 1.0e-185 654.8 808 45.8
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 1.2e-184 651.4 957 42.9
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.3e-183 647.9 829 44.3
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 7.3e-179 632.1 828 44.2
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 3.2e-174 616.7 631 51.8
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.6e-173 614.4 841 43.3
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 1.6e-173 614.4 1133 36.2
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 4.6e-173 612.8 839 43.4
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.7e-172 610.9 736 46.6
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 2.3e-172 610.5 996 38.1
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.6e-170 604.4 724 46.8
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.1e-170 604.0 724 47.0
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.8e-169 600.9 734 46.2
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 3.1e-169 600.1 965 39.8
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.6e-165 587.8 1145 36.6
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 8.1e-162 575.5 1115 35.9
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 1.1e-158 565.1 834 41.2
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 5.6e-155 552.7 836 40.1
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 1.2e-152 545.0 850 40.2
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 7.8e-149 532.3 841 37.6
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 4.2e-142 510.0 825 40.8
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.7e-141 507.3 756 42.2
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 2.9e-135 487.3 554 47.1
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 7.9e-133 479.2 657 43.1
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.5e-131 474.2 774 37.2
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.2e-128 465.3 843 36.4
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 2.6e-128 464.2 920 34.8
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 4.2e-126 456.8 479 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 5.5e-118 429.9 872 34.5
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.8e-114 417.5 658 38.1
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 6.5e-103 379.8 415 48.0
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 4.5e-96 357.1 382 49.2
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 7.7e-96 356.3 652 38.0
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 2.0e-67 261.9 382 41.9
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 6.8e-60 236.9 153 81.0
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 6.8e-60 236.9 729 27.2
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 4.7e-53 214.2 317 39.7
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 4.4e-51 207.6 275 42.5
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 1.3e-50 206.1 132 80.3
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 8.1e-45 186.8 167 56.9
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 1.7e-42 179.1 247 42.5
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.8e-42 177.9 247 42.1
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 4.2e-41 174.5 247 41.7
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 7.6e-35 153.7 613 25.9
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.7e-32 145.2 254 36.2
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.4e-28 132.9 571 25.2
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 2.2e-26 125.6 76 85.5
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.5e-16 91.7 111 47.7
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.1e-13 82.4 86 47.7
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 4.2e-09 68.2 517 21.7
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 6.1e-08 64.3 257 24.5
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 1.0e-07 63.5 181 25.4
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 1.8e-07 62.8 181 25.4
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 3.9e-07 61.6 181 24.3
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 3.9e-07 61.6 181 24.3
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 5.1e-07 61.2 181 24.3
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 1.9e-06 59.3 181 23.8
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 2.5e-06 58.9 181 24.9
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 2.5e-06 58.9 181 24.9
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 3.3e-06 58.5 180 25.0
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 5.7e-06 57.8 181 24.3
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 5.7e-06 57.8 181 24.3
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 7.4e-06 57.4 246 24.4


User provided reference genes

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