Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g05600 Schrenkiella parvula HOM05D003528 ORTHO05D015900 0.0e+00 2083.9 1034 100.0
Thhalv10019983m.g Eutrema salsugineum HOM05D003528 ORTHO05D015900 0.0e+00 1301.2 1039 68.8
C03p42300 Brassica napus HOM05D003528 ORTHO05D015900 0.0e+00 1202.2 1084 64.4
A03p34760 Brassica napus HOM05D003528 ORTHO05D015900 0.0e+00 1201.0 1060 65.8
BolC3t16504H Brassica oleracea HOM05D003528 ORTHO05D015900 0.0e+00 1200.7 1070 65.1
CARHR081190 Cardamine hirsuta HOM05D003528 ORTHO05D015900 0.0e+00 1165.2 1051 62.6
BraA03t12657Z Brassica rapa HOM05D003528 ORTHO05D015900 0.0e+00 1164.1 1067 64.0
AT3G66652 Arabidopsis thaliana HOM05D003528 ORTHO05D015900 0.0e+00 1108.2 1039 61.7
AL3G17720 Arabidopsis lyrata HOM05D003528 ORTHO05D015900 0.0e+00 1088.2 1045 61.0
Carub.0003s0612 Capsella rubella HOM05D003528 ORTHO05D015900 0.0e+00 1085.9 1047 60.4
THA.LOC104827097 Tarenaya hassleriana HOM05D003528 ORTHO05D015900 5.1e-135 486.5 1124 36.4
Cfa015318 Carpinus fangiana HOM05D007976 ORTHO05D002678 9.9e-30 136.7 1300 23.1
Haze_01305 Corylus avellana HOM05D007976 ORTHO05D002678 1.6e-27 129.4 1121 22.8
Manes.03G204700 Manihot esculenta HOM05D007976 ORTHO05D002678 5.1e-26 124.4 1276 23.8
TWI09G1545 Tripterygium wilfordii HOM05D007976 ORTHO05D002678 2.0e-22 112.5 1265 23.7
GSVIVG01034996001 Vitis vinifera HOM05D007976 ORTHO05D002678 5.8e-22 110.9 525 26.3
Dinv15173 Davidia involucrata HOM05D007976 ORTHO05D002678 2.9e-21 108.6 1316 23.8
Potri.010G145150 Populus trichocarpa HOM05D007976 ORTHO05D002678 8.4e-21 107.1 1253 22.3
Thecc.04G300200 Theobroma cacao HOM05D007976 ORTHO05D002678 1.1e-20 106.7 1317 23.8
Cpa.g.sc9.60 Carica papaya HOM05D007976 ORTHO05D002678 2.1e-19 102.4 1307 23.0
COL.COLO4_34619 Corchorus olitorius HOM05D007976 ORTHO05D002678 1.3e-18 99.8 576 26.6
CSS0029168 Camellia sinensis var. sinensis HOM05D007976 ORTHO05D002678 3.9e-18 98.2 1296 23.2
Duzib212G0249 Durio zibethinus HOM05D007976 ORTHO05D002678 5.1e-18 97.8 1284 22.4
Gorai.011G199900 Gossypium raimondii HOM05D007976 ORTHO05D002678 7.4e-17 94.0 301 29.6
Prupe.1G117900 Prunus persica HOM05D007976 ORTHO05D002678 2.1e-16 92.4 1267 23.5
Sabra10G0112100 Salix brachista HOM05D007976 ORTHO05D002678 9.0e-15 87.0 1295 22.2
PGR031G2802 Punica granatum HOM05D007976 ORTHO05D002678 1.2e-14 86.7 253 28.5
Gohir.A10G172100 Gossypium hirsutum HOM05D007976 ORTHO05D002678 3.4e-14 85.1 559 24.5
QL06p012216 Quercus lobata HOM05D007976 ORTHO05D002678 4.9e-13 81.3 1096 22.5
Aqoxy5G03581 Aquilegia oxysepala HOM05D007976 ORTHO05D002678 1.4e-12 79.7 612 24.5
CDE02G3961 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 1.9e-12 79.3 284 24.6
MD16G1154500 Malus domestica HOM05D007976 ORTHO05D002678 1.9e-12 79.3 1242 22.8
Cc03_g00860 Coffea canephora HOM05D007976 ORTHO05D002678 5.5e-12 77.8 669 23.9
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 1.6e-11 76.3 75 48.0
ECA246G2174 Erigeron canadensis HOM05D007976 ORTHO05D002678 2.1e-11 75.9 351 24.8
SHI00143 Sapria himalayana HOM05D003779 ORTHO05D002678 2.1e-11 75.9 171 33.3
Sopen12g033960 Solanum pennellii HOM05D007976 ORTHO05D002678 2.7e-11 75.5 1200 24.2
FAN12G1581 Fragaria x ananassa HOM05D007976 ORTHO05D002678 3.5e-11 75.1 180 28.9
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 6.0e-11 74.3 1185 22.8
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 6.0e-11 74.3 70 50.0
TAR365G0148 Trochodendron aralioides HOM05D007976 ORTHO05D002678 6.0e-11 74.3 1386 22.4
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 1.0e-10 73.6 71 47.9
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 1.0e-10 73.6 55 54.5
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.0e-10 73.6 97 39.2
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.0e-10 73.6 159 34.0
Nn4g25570 Nelumbo nucifera HOM05D007976 ORTHO05D002678 1.0e-10 73.6 1137 22.9
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 1.0e-10 73.6 115 35.7
Pp3c7_2840 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.0e-10 73.6 182 26.9
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 1.3e-10 73.2 71 47.9
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 1.8e-10 72.8 52 55.8
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 2.3e-10 72.4 52 57.7
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 3.0e-10 72.0 97 36.1
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 3.0e-10 72.0 54 53.7
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 3.0e-10 72.0 95 37.9
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 3.9e-10 71.6 97 36.1
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 3.9e-10 71.6 112 37.5
Solyc12g099280.2 Solanum lycopersicum HOM05D007976 ORTHO05D002678 3.9e-10 71.6 1211 24.4
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 5.1e-10 71.2 94 37.2
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 6.7e-10 70.9 52 51.9
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 6.7e-10 70.9 112 37.5
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 8.7e-10 70.5 97 36.1
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 8.7e-10 70.5 52 55.8
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 8.7e-10 70.5 52 55.8
Mapoly0032s0123 Marchantia polymorpha HOM05D003779 ORTHO05D002678 1.1e-09 70.1 99 35.4
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 1.1e-09 70.1 97 36.1
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 1.1e-09 70.1 97 35.1
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 1.5e-09 69.7 97 37.1
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 1.5e-09 69.7 52 51.9
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 1.5e-09 69.7 79 43.0
Hund11973 Selenicereus undatus HOM05D007976 ORTHO05D002678 1.9e-09 69.3 52 50.0
unitig_0.g2698 Utricularia gibba HOM05D003779 ORTHO05D002678 1.9e-09 69.3 52 53.8
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 2.5e-09 68.9 54 51.9
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 2.5e-09 68.9 116 32.8
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 3.3e-09 68.6 249 28.1
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.3e-09 68.6 96 35.4
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.3e-09 68.6 96 35.4
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 4.3e-09 68.2 52 53.8
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 4.3e-09 68.2 54 48.1
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 5.6e-09 67.8 52 51.9
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 5.6e-09 67.8 96 34.4
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 5.6e-09 67.8 116 33.6
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 5.6e-09 67.8 116 33.6
AT5G58040 Arabidopsis thaliana HOM05D003779 ORTHO05D002678 7.4e-09 67.4 52 50.0
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 7.4e-09 67.4 157 30.6
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 7.4e-09 67.4 52 51.9
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 7.4e-09 67.4 95 34.7
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 7.4e-09 67.4 109 33.9
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 7.4e-09 67.4 52 50.0
PGSC0003DMG400004621 Solanum tuberosum HOM05D007976 ORTHO05D002678 7.4e-09 67.4 732 24.2
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 7.4e-09 67.4 97 33.0
Carub.0008s1859 Capsella rubella HOM05D003779 ORTHO05D002678 9.6e-09 67.0 174 26.4
SMO115G0353 Selaginella moellendorffii HOM05D003779 ORTHO05D002678 9.6e-09 67.0 75 41.3
AUR62043250 Chenopodium quinoa HOM05D003779 ORTHO05D002678 1.3e-08 66.6 56 48.2
Lj3A831T87 Lonicera japonica HOM05D007976 ORTHO05D002678 1.3e-08 66.6 163 29.4
SHI02625 Sapria himalayana HOM05D003779 ORTHO05D002678 1.3e-08 66.6 106 40.6
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.6e-08 66.2 246 26.8
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.1e-08 65.9 197 29.4
Gohir.D05G053000 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.1e-08 65.9 68 44.1
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 2.1e-08 65.9 68 44.1
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 2.8e-08 65.5 42 59.5
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 2.8e-08 65.5 52 50.0
HPP92_016075 Vanilla planifolia HOM05D003779 ORTHO05D002678 2.8e-08 65.5 181 28.7
AagrBONN_evm.TU.Sc2ySwM_344.140 Anthoceros agrestis HOM05D003779 ORTHO05D002678 3.7e-08 65.1 74 40.5
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 3.7e-08 65.1 52 46.2
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.7e-08 65.1 88 36.4
Aa31LG3G13870 Aethionema arabicum HOM05D003779 ORTHO05D002678 4.8e-08 64.7 52 48.1
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 4.8e-08 64.7 52 48.1
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 4.8e-08 64.7 52 48.1
Pp3c11_22610 Physcomitrium patens HOM05D003779 ORTHO05D002678 4.8e-08 64.7 88 34.1
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 8.2e-08 63.9 96 32.3
Dinv44288 Davidia involucrata HOM05D007976 ORTHO05D002678 8.2e-08 63.9 1106 21.8
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 8.2e-08 63.9 52 48.1
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 1.1e-07 63.5 52 48.1
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 1.1e-07 63.5 83 39.8
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 1.8e-07 62.8 125 28.8
TPR.G829 Trifolium pratense HOM05D007976 ORTHO05D002678 2.4e-07 62.4 65 41.5
BcaC04g19912 Brassica carinata HOM05D003779 ORTHO05D002678 1.2e-06 60.1 82 37.8
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.2e-06 60.1 99 35.4
MD13G1154900 Malus domestica HOM05D007976 ORTHO05D002678 1.5e-06 59.7 1222 22.3
RcHm_v2.0_Chr4g0425101 Rosa chinensis HOM05D007976 ORTHO05D002678 1.5e-06 59.7 1078 21.7
DCAR_015453 Daucus carota HOM05D003779 ORTHO05D002678 2.0e-06 59.3 48 47.9
Psat6g117320 Pisum sativum HOM05D007976 ORTHO05D002678 4.5e-06 58.2 150 32.0
Zm00001eb014820 Zea mays HOM05D003779 ORTHO05D002678 5.8e-06 57.8 238 25.6
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 7.6e-06 57.4 98 32.7
DCAR_003113 Daucus carota HOM05D003779 ORTHO05D177454 1.0e-05 57.0 51 39.2


User provided reference genes

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