Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.2e-311 1072.4 564 100.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 8.1e-236 820.5 566 79.2
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-235 819.7 566 78.6
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.6e-234 815.5 567 78.3
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-233 812.0 567 78.0
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.9e-233 812.0 567 78.0
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.7e-231 805.4 575 76.7
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 4.6e-231 804.7 554 79.8
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.2e-216 755.4 570 74.0
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.0e-210 736.1 565 72.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 8.5e-209 730.7 555 71.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 7.4e-205 717.6 566 70.0
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.7e-202 707.6 547 70.6
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.2e-184 649.0 563 64.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.0e-153 545.4 539 62.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 4.0e-150 535.8 568 55.5
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.4e-116 422.2 560 45.4
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.4e-116 422.2 576 45.5
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.7e-113 411.8 516 45.7
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.8e-111 406.0 516 45.5
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 6.2e-111 405.6 493 45.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 6.2e-111 405.6 493 45.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.0e-110 402.9 517 45.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.9e-109 398.3 541 43.6
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.3e-108 397.9 582 41.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.2e-108 397.1 562 43.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.9e-107 394.0 482 47.3
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 7.1e-107 392.1 525 43.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.2e-106 391.3 531 43.9
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.7e-106 390.2 525 48.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 3.0e-105 386.7 490 44.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.1e-104 384.8 527 44.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.7e-103 379.8 491 44.6
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.2e-101 374.8 524 44.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 4.5e-101 372.9 554 42.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.0e-100 371.7 577 41.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.0e-100 371.7 518 43.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.3e-100 371.3 528 43.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.2e-100 370.5 510 43.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 5.5e-99 365.9 640 37.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 9.3e-99 365.2 579 40.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.2e-98 364.8 573 40.7
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.7e-98 363.6 554 42.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.5e-98 363.2 457 43.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 7.9e-98 362.1 565 39.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.0e-97 361.7 579 41.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.3e-97 361.3 510 42.5
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.8e-97 360.9 488 41.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.3e-97 360.5 496 44.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 8.7e-97 358.6 617 39.2
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.1e-96 358.2 535 42.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.1e-96 358.2 532 40.8
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-96 357.8 577 39.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.5e-96 357.8 509 43.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.9e-96 357.5 515 43.1
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.5e-96 357.1 524 42.4
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.3e-96 356.7 561 41.9
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 5.7e-96 355.9 541 43.4
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.6e-95 354.4 513 42.9
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.8e-95 353.6 517 40.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.3e-95 352.4 490 42.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 6.3e-95 352.4 508 42.3
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.4e-94 350.5 417 45.6
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.4e-94 350.5 501 41.5
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.0e-94 348.6 435 43.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 9.0e-94 348.6 537 42.1
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 5.9e-93 345.9 508 40.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 7.7e-93 345.5 565 40.9
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.3e-92 344.7 587 40.4
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 2.9e-92 343.6 465 40.6
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.5e-92 342.0 423 44.4
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.4e-91 341.3 538 40.0
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 5.5e-91 339.3 556 39.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.6e-90 337.8 528 40.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.6e-90 337.8 557 39.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.1e-90 337.4 600 38.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.6e-90 336.7 428 44.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.4e-89 334.7 530 38.5
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.8e-89 334.3 424 42.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.1e-88 331.6 423 42.3
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.0e-88 330.9 575 37.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 4.3e-88 329.7 483 41.0
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.2e-87 327.4 564 39.7
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.8e-87 327.0 472 41.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.4e-86 324.7 497 38.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.8e-86 324.3 480 40.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 4.1e-86 323.2 470 41.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 9.1e-86 322.0 534 39.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.1e-86 322.0 454 41.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.2e-85 321.6 525 38.9
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.2e-85 321.6 489 40.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.0e-85 320.9 455 40.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.8e-84 316.6 533 38.1
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.0e-84 316.2 530 39.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.5e-84 315.5 547 37.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.9e-83 314.3 597 37.4
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 7.2e-83 312.4 446 39.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.1e-82 310.8 529 38.8
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.1e-82 310.8 399 44.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.1e-80 305.1 548 34.9
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.3e-80 303.5 459 38.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-79 301.2 529 38.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.3e-79 299.3 544 35.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.5e-77 294.7 522 37.0
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 5.5e-75 286.2 364 40.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.6e-74 284.6 460 36.5
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.7e-71 274.6 476 35.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 8.8e-65 252.3 394 41.4
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-64 251.5 439 39.4
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 6.3e-63 246.1 504 38.5
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.4e-62 244.2 508 37.4
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.4e-62 244.2 508 37.4
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.4e-62 244.2 508 37.4
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.5e-61 240.4 508 37.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.5e-61 240.4 508 37.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.4e-57 228.4 240 46.2
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 5.4e-54 216.5 323 44.0
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.5e-51 205.7 361 42.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 9.5e-51 205.7 320 44.1
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 9.5e-51 205.7 311 44.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.8e-46 191.4 171 50.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-44 185.3 351 39.0
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.3e-43 180.3 184 44.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-38 165.2 284 41.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.4e-38 165.2 369 36.3
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 8.6e-36 156.0 142 50.7
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 3.4e-32 144.1 332 30.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 5.8e-32 143.3 404 31.9
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.1e-28 130.2 285 31.2
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.1e-26 124.8 346 28.0
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 2.8e-26 124.4 383 32.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.8e-25 121.7 213 35.2
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 5.2e-25 120.2 231 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 6.8e-25 119.8 363 28.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.3e-20 105.5 282 30.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-20 104.8 88 50.0
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-20 104.8 88 50.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-20 104.8 172 37.8
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.5e-16 92.0 132 35.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-14 83.2 275 26.5
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-13 82.4 75 52.0
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 6.0e-13 80.1 327 23.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.6e-12 76.6 123 42.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.4e-06 57.0 54 40.7


User provided reference genes

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