Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.5e-130 469.5 234 100.0
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-115 419.1 234 86.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.3e-115 419.1 234 86.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 7.3e-114 414.1 234 85.9
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.3e-114 414.1 234 85.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 7.3e-114 414.1 234 85.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.7e-113 411.4 236 86.9
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.6e-92 343.2 235 73.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 5.1e-91 338.2 235 70.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 8.6e-91 337.4 235 72.8
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.5e-90 335.9 235 73.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.5e-90 335.9 235 73.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.3e-90 335.1 235 72.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.8e-88 329.7 232 72.0
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 4.0e-88 328.6 236 70.3
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 7.8e-84 314.3 235 68.9
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.1e-82 310.5 235 68.5
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 3.6e-81 305.4 235 68.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 9.6e-74 280.8 236 59.7
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.2e-70 269.6 235 58.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.4e-70 267.7 235 58.7
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-58 230.7 232 48.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.7e-58 228.4 232 48.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 9.6e-58 227.6 232 48.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.3e-57 227.3 234 48.3
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.3e-57 227.3 232 48.3
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 8.2e-57 224.6 232 48.3
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-56 224.2 232 46.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.4e-56 223.8 232 47.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 5.3e-56 221.9 231 47.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.9e-56 221.5 236 47.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 6.9e-56 221.5 232 49.6
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.9e-55 218.4 233 46.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.9e-55 218.4 232 49.6
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-54 217.6 232 47.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.0e-54 217.6 232 46.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.7e-54 216.9 233 45.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.2e-54 216.5 232 45.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-54 216.5 232 45.7
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.0e-54 215.3 236 47.0
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.0e-54 215.3 236 47.0
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 5.0e-54 215.3 230 46.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 8.5e-54 214.5 230 45.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.9e-53 213.4 232 44.8
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.5e-53 213.0 236 47.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.2e-53 212.6 236 47.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 3.2e-53 212.6 230 44.8
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.2e-53 212.2 232 44.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 9.3e-53 211.1 232 45.3
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.1e-52 209.9 233 46.4
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 6.1e-52 208.4 234 44.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.0e-51 207.6 233 46.4
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.3e-51 207.2 233 45.5
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.8e-51 206.8 229 42.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.0e-51 206.1 230 45.7
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-51 206.1 231 44.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 5.1e-51 205.3 233 44.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.7e-51 204.5 231 44.6
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-50 203.8 217 46.5
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.5e-50 203.0 233 43.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.3e-50 202.6 233 44.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 4.3e-50 202.2 232 45.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.7e-50 201.8 230 45.7
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 9.7e-50 201.1 236 41.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.6e-49 200.3 234 44.9
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.2e-49 199.9 233 44.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.8e-49 199.5 232 42.7
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.7e-49 199.1 233 45.1
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.7e-49 199.1 230 45.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 8.2e-49 198.0 230 44.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.1e-48 197.6 232 46.1
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-48 197.6 232 42.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.1e-48 197.6 233 42.9
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.4e-48 196.4 234 43.6
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.4e-48 196.4 234 41.5
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.1e-48 196.1 233 46.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.1e-48 195.7 202 47.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.3e-48 195.3 232 43.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 6.9e-48 194.9 230 43.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.1e-48 194.5 233 42.9
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.1e-48 194.5 226 45.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.5e-47 193.7 233 45.5
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.0e-47 193.4 233 44.2
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.6e-47 193.0 236 42.4
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.6e-47 193.0 230 43.5
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-46 191.0 233 43.8
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.3e-46 190.7 232 41.4
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-46 190.7 233 43.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-46 190.7 233 43.8
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.8e-46 189.1 229 41.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.0e-46 188.7 233 43.3
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 6.5e-46 188.3 233 43.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.5e-46 188.3 236 43.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-45 187.2 225 43.6
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 5.5e-45 185.3 234 44.9
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 5.5e-45 185.3 230 42.6
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 7.2e-45 184.9 202 43.6
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.1e-44 183.3 234 42.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.7e-44 183.0 228 42.1
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.6e-44 182.2 232 41.4
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.1e-44 181.8 235 41.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.0e-43 181.0 230 39.1
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.0e-43 179.5 235 40.0
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-43 178.7 232 40.5
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-42 177.6 238 41.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-42 177.2 232 40.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.5e-42 177.2 233 41.2
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.3e-42 176.0 229 38.0
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.7e-42 175.3 229 41.9
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.8e-41 172.9 235 38.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.7e-41 172.6 233 41.2
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.7e-41 172.6 233 40.8
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.8e-41 172.2 199 42.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 6.3e-41 171.8 232 41.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 8.2e-41 171.4 234 42.3
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.4e-40 170.6 203 43.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-40 170.2 234 42.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.8e-40 170.2 233 41.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 4.1e-40 169.1 233 40.8
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.3e-40 168.7 236 40.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.5e-39 167.2 232 40.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-38 164.1 237 41.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.4e-37 160.6 191 39.8
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.5e-37 159.8 232 40.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.2e-37 159.1 203 41.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.2e-37 159.1 203 41.4
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 2.1e-36 156.8 156 48.1
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.6e-36 156.0 236 36.0
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.6e-36 156.0 219 39.7
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 4.7e-36 155.6 231 36.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.0e-35 154.5 215 37.2
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.9e-35 152.5 189 44.4
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-35 151.8 234 38.5
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.7e-35 151.8 201 40.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.7e-35 151.8 156 44.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 9.7e-34 147.9 154 48.1
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.2e-33 146.7 178 39.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-32 144.4 149 45.0
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.4e-32 144.1 168 43.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 4.1e-32 142.5 212 34.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.5e-31 139.0 212 34.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.9e-31 138.7 229 35.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.2e-30 136.7 156 44.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.8e-30 136.0 218 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.2e-29 132.9 234 32.9
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.3e-27 126.7 116 50.9
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.0e-27 125.9 232 32.8
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 8.8e-27 124.8 237 34.2
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-26 124.4 147 42.9
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.5e-26 124.0 184 35.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.6e-26 123.2 182 36.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 4.1e-24 115.9 141 41.1
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 9.1e-24 114.8 163 38.7
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-23 114.0 209 36.4
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 7.7e-23 111.7 220 29.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.8e-22 109.4 124 43.5
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 8.5e-22 108.2 220 30.9
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.6e-20 104.0 230 29.1
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.7e-20 103.2 111 45.0
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.0e-19 101.3 117 43.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.8e-18 94.7 201 33.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 4.1e-16 89.4 80 51.2
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.7e-15 85.1 120 40.8
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-13 79.3 144 34.7
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.2e-13 78.6 94 44.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-12 77.4 113 33.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.1e-12 77.0 96 40.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.0e-12 75.1 126 35.7
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.3e-11 73.6 80 42.5
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.2e-10 71.2 77 42.9
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 2.6e-10 70.1 152 24.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.6e-10 70.1 103 34.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 3.7e-09 66.2 56 51.8
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.4e-08 63.5 80 41.2
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.6e-07 60.8 92 40.2
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.5e-07 59.3 73 39.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.3e-06 57.0 100 31.0


User provided reference genes

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