Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20790 Schrenkiella parvula HOM05D001137 ORTHO05D015495 6.1e-39 163.7 83 100.0
AL6G39400 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 2.0e-29 132.1 73 89.0
AT5G27630 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 4.8e-28 127.5 73 84.9
BcaC05g30147 Brassica carinata HOM05D001137 ORTHO05D015495 4.8e-28 127.5 79 81.0
Carub.0006s2496 Capsella rubella HOM05D001137 ORTHO05D001967 8.2e-28 126.7 73 84.9
CARHR186160 Cardamine hirsuta HOM05D001137 ORTHO05D001967 2.4e-27 125.2 73 84.9
Thhalv10003780m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 2.4e-27 125.2 76 82.9
Aa31LG11G9380 Aethionema arabicum HOM05D001137 ORTHO05D001967 4.1e-27 124.4 77 77.9
THA.LOC104821718 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 4.1e-27 124.4 76 81.6
THA.LOC104802801 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 5.3e-27 124.0 76 81.6
BcaB04g19268 Brassica carinata HOM05D001137 ORTHO05D001967 1.6e-26 122.5 76 80.3
C03p41510 Brassica napus HOM05D001137 ORTHO05D001967 1.6e-26 122.5 76 80.3
BolC3t16432H Brassica oleracea HOM05D001137 ORTHO05D001967 1.6e-26 122.5 76 80.3
Thhalv10020218m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 2.6e-26 121.7 76 80.3
Manes.08G119300 Manihot esculenta HOM05D001137 ORTHO05D001967 7.7e-26 120.2 76 78.9
BcaC05g30123 Brassica carinata HOM05D001137 ORTHO05D001967 1.0e-25 119.8 76 78.9
C05p61810 Brassica napus HOM05D001137 ORTHO05D001967 1.0e-25 119.8 76 78.9
BolC5t34841H Brassica oleracea HOM05D001137 ORTHO05D001967 1.0e-25 119.8 76 78.9
CARHR079760 Cardamine hirsuta HOM05D001137 ORTHO05D001967 1.3e-25 119.4 76 77.6
Sp3g04280 Schrenkiella parvula HOM05D001137 ORTHO05D001967 1.3e-25 119.4 72 81.9
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 2.2e-25 118.6 76 78.9
BraA05t23031Z Brassica rapa HOM05D001137 ORTHO05D001967 2.2e-25 118.6 76 77.6
Ciclev10000504m.g Citrus clementina HOM05D001137 ORTHO05D001967 2.9e-25 118.2 77 77.9
BcaB04g19270 Brassica carinata HOM05D001643 ORTHO05D001580 3.8e-25 117.9 76 77.6
BcaC03g17794 Brassica carinata HOM05D001137 ORTHO05D001967 3.8e-25 117.9 73 82.2
Carub.0003s0470 Capsella rubella HOM05D001137 ORTHO05D001967 6.5e-25 117.1 76 77.6
C02p58200 Brassica napus HOM05D001137 ORTHO05D001967 1.1e-24 116.3 73 80.8
BolC2t11887H Brassica oleracea HOM05D001137 ORTHO05D001967 1.1e-24 116.3 73 80.8
AT3G05420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 1.5e-24 115.9 76 77.6
AL3G15980 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 1.9e-24 115.5 76 76.3
BcaC09g47824 Brassica carinata HOM05D001137 ORTHO05D001967 1.9e-24 115.5 76 75.0
A02p38690 Brassica napus HOM05D001137 ORTHO05D001967 1.9e-24 115.5 73 78.1
BraA02t08845Z Brassica rapa HOM05D001137 ORTHO05D001967 1.9e-24 115.5 73 78.1
BraSC132t45504Z Brassica rapa HOM05D001137 ORTHO05D001967 1.9e-24 115.5 76 75.0
Manes.09G169100 Manihot esculenta HOM05D001137 ORTHO05D001967 2.5e-24 115.2 76 75.0
Potri.005G026900 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.5e-24 115.2 76 73.7
BNapus_Darmor_BZH_scaffold_114p00080 Brassica napus HOM05D001137 ORTHO05D001967 9.4e-24 113.2 76 73.7
A03p34120 Brassica napus HOM05D001137 ORTHO05D001967 1.2e-23 112.8 76 75.0
Thecc.05G311100 Theobroma cacao HOM05D001137 ORTHO05D001967 1.2e-23 112.8 78 75.6
Solyc01g099350.3 Solanum lycopersicum HOM05D001137 ORTHO05D001967 1.6e-23 112.5 76 76.3
Sopen01g042910 Solanum pennellii HOM05D001137 ORTHO05D001967 1.6e-23 112.5 76 76.3
PGSC0003DMG400024701 Solanum tuberosum HOM05D001137 ORTHO05D001967 1.6e-23 112.5 76 76.3
Atru.chr2.15 Acer truncatum HOM05D001137 ORTHO05D001967 2.7e-23 111.7 76 73.7
Potri.013G018800 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.7e-23 111.7 76 72.4
CAN.G1034.50 Capsicum annuum HOM05D001137 ORTHO05D001967 3.6e-23 111.3 76 75.0
Sabra13G0021400 Salix brachista HOM05D001137 ORTHO05D001967 3.6e-23 111.3 77 71.4
TWI56G1154 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 4.7e-23 110.9 78 75.6
BolC1t05695H Brassica oleracea HOM05D001137 ORTHO05D001967 6.1e-23 110.5 76 72.4
BraA03t12585Z Brassica rapa HOM05D001137 ORTHO05D001967 6.1e-23 110.5 90 66.7
Nn5g30054 Nelumbo nucifera HOM05D001137 ORTHO05D001967 6.1e-23 110.5 75 73.3
Nitab4.5_0002344g0120 Nicotiana tabacum HOM05D001137 ORTHO05D001967 6.1e-23 110.5 77 76.6
Peaxi162Scf00037g00923 Petunia axillaris HOM05D001137 ORTHO05D001967 6.1e-23 110.5 76 75.0
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 6.1e-23 110.5 76 71.1
Gohir.A11G295100 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.0e-22 109.8 73 72.6
Duzib128G1578 Durio zibethinus HOM05D001137 ORTHO05D001967 1.4e-22 109.4 73 74.0
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.4e-22 109.4 73 74.0
Hund07086 Selenicereus undatus HOM05D001137 ORTHO05D015495 1.4e-22 109.4 78 71.8
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 1.8e-22 109.0 79 70.9
Hund07088 Selenicereus undatus HOM05D001137 ORTHO05D001967 1.8e-22 109.0 80 70.0
Dinv40308 Davidia involucrata HOM05D001137 ORTHO05D001967 2.3e-22 108.6 76 75.0
Gohir.D11G309900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.3e-22 108.6 73 71.2
Nitab4.5_0004754g0030 Nicotiana tabacum HOM05D001137 ORTHO05D001967 2.3e-22 108.6 72 76.4
TAR365G1066 Trochodendron aralioides HOM05D001137 ORTHO05D001967 2.3e-22 108.6 75 72.0
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 3.0e-22 108.2 78 74.4
Actinidia05688 Actinidia chinensis HOM05D001137 ORTHO05D001967 5.2e-22 107.5 75 69.3
TAR633G1242 Trochodendron aralioides HOM05D001137 ORTHO05D001967 5.2e-22 107.5 75 72.0
GSVIVG01031116001 Vitis vinifera HOM05D001137 ORTHO05D001967 5.2e-22 107.5 76 73.7
Actinidia23650 Actinidia chinensis HOM05D001137 ORTHO05D001967 6.7e-22 107.1 75 68.0
Duzib177G0730 Durio zibethinus HOM05D001137 ORTHO05D001967 6.7e-22 107.1 78 69.2
Gorai.007G342000 Gossypium raimondii HOM05D001137 ORTHO05D001967 6.7e-22 107.1 73 69.9
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 6.7e-22 107.1 73 72.6
CANSAT54G2339 Cannabis sativa HOM05D001137 ORTHO05D001967 8.8e-22 106.7 72 73.6
COL.COLO4_10493 Corchorus olitorius HOM05D001137 ORTHO05D001967 8.8e-22 106.7 79 69.6
PSO170G2566 Papaver somniferum HOM05D001137 ORTHO05D001967 8.8e-22 106.7 75 68.0
vmacro04982 Vaccinium macrocarpon HOM05D001137 ORTHO05D001967 1.1e-21 106.3 77 72.7
Gohir.A13G108500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.5e-21 105.9 78 69.2
Oeu020840.1 Olea europaea HOM05D001137 ORTHO05D001967 1.5e-21 105.9 72 75.0
PGR031G2322 Punica granatum HOM05D001137 ORTHO05D001967 1.5e-21 105.9 71 73.2
Duzib106G0557 Durio zibethinus HOM05D001137 ORTHO05D001967 2.0e-21 105.5 78 69.2
Sc09g0003040 Simmondsia chinensis HOM05D001137 ORTHO05D001967 2.6e-21 105.1 81 69.1
Medtr7g113200 Medicago truncatula HOM05D001137 ORTHO05D001967 3.3e-21 104.8 75 70.7
Gohir.D11G276700 Gossypium hirsutum HOM05D001137 ORTHO05D001967 4.4e-21 104.4 78 67.9
Gorai.007G298800 Gossypium raimondii HOM05D001137 ORTHO05D001967 4.4e-21 104.4 78 67.9
Nn3g21409 Nelumbo nucifera HOM05D001137 ORTHO05D001967 4.4e-21 104.4 71 70.4
VMungo0540G2300 Vigna mungo HOM05D001137 ORTHO05D001967 4.4e-21 104.4 75 68.0
Dinv30786 Davidia involucrata HOM05D001137 ORTHO05D001967 5.7e-21 104.0 76 71.1
Gohir.A11G266400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 5.7e-21 104.0 78 67.9
Hma1.2p1_1334F.1_g276250 Hydrangea macrophylla HOM05D001137 ORTHO05D001967 5.7e-21 104.0 75 72.0
Oeu012110.2 Olea europaea HOM05D001137 ORTHO05D001967 5.7e-21 104.0 75 70.7
HPP92_011343 Vanilla planifolia HOM05D001137 ORTHO05D001967 5.7e-21 104.0 75 66.7
MSTRG.27988 Avicennia marina HOM05D001137 ORTHO05D001967 7.5e-21 103.6 75 69.3
Gorai.013G125100 Gossypium raimondii HOM05D001137 ORTHO05D001967 7.5e-21 103.6 78 67.9
HanXRQChr14g0433311 Helianthus annuus HOM05D001137 ORTHO05D001967 7.5e-21 103.6 75 68.0
Psat0s3231g0040 Pisum sativum HOM05D001137 ORTHO05D001967 7.5e-21 103.6 75 69.3
CSS0025432 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 9.7e-21 103.2 69 75.4
SGA_v2.0_scaffold80G25790 Striga asiatica HOM05D001137 ORTHO05D001967 9.7e-21 103.2 77 68.8
TPR.G33177 Trifolium pratense HOM05D001137 ORTHO05D001967 9.7e-21 103.2 75 69.3
EL10Ac4g09377 Beta vulgaris HOM05D001137 ORTHO05D001967 1.3e-20 102.8 74 73.0
MD12G1216500 Malus domestica HOM05D001137 ORTHO05D001967 1.7e-20 102.4 76 68.4
ECA236G0157 Erigeron canadensis HOM05D000001 ORTHO05D001967 2.2e-20 102.1 76 71.1
HanXRQChr11g0339451 Helianthus annuus HOM05D001137 ORTHO05D001967 2.2e-20 102.1 76 68.4
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 2.2e-20 102.1 76 68.4
Rhsim07G0183300 Rhododendron simsii HOM05D001137 ORTHO05D001967 2.2e-20 102.1 72 70.8
CDE12G0037 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 2.8e-20 101.7 71 71.8
Ca_05808_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 3.7e-20 101.3 75 68.0
Lj5g0027868 Lotus japonicus HOM05D001137 ORTHO05D001967 3.7e-20 101.3 76 67.1
PSO210G0810 Papaver somniferum HOM05D001137 ORTHO05D001967 3.7e-20 101.3 75 64.0
Prupe.6G322800 Prunus persica HOM05D001137 ORTHO05D001967 3.7e-20 101.3 76 67.1
Migut.N01989 Erythranthe guttata HOM05D001137 ORTHO05D001967 4.8e-20 100.9 76 68.4
Lalb_Chr02g0148181 Lupinus albus HOM05D001137 ORTHO05D001967 4.8e-20 100.9 75 66.7
Gohir.D13G111400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 6.3e-20 100.5 78 66.7
Migut.N01976 Erythranthe guttata HOM05D001137 ORTHO05D001967 8.2e-20 100.1 70 70.0
FAN05G3662 Fragaria x ananassa HOM05D001137 ORTHO05D001967 8.2e-20 100.1 77 68.8
Phvul.006G090700 Phaseolus vulgaris HOM05D001137 ORTHO05D001967 8.2e-20 100.1 75 64.0
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 8.2e-20 100.1 77 68.8
DCAR_029395 Daucus carota HOM05D001137 ORTHO05D001967 1.1e-19 99.8 71 69.0
Cc02_g31050 Coffea canephora HOM05D001137 ORTHO05D001967 1.4e-19 99.4 72 70.8
MD04G1202500 Malus domestica HOM05D001137 ORTHO05D001967 1.4e-19 99.4 76 65.8
FAN02G2722 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.8e-19 99.0 77 67.5
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.8e-19 99.0 77 67.5
Glyma.20G235500 Glycine max HOM05D001137 ORTHO05D001967 1.8e-19 99.0 71 69.0
CSS0049898 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 2.4e-19 98.6 75 69.3
CDE01G0048 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 2.4e-19 98.6 71 69.0
Ca_10122_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 2.4e-19 98.6 75 65.3
Glyma.03G236500 Glycine max HOM05D001137 ORTHO05D001967 2.4e-19 98.6 75 68.0
Zm00001eb063690 Zea mays HOM05D001137 ORTHO05D001967 2.4e-19 98.6 69 66.7
Aqoxy5G00704 Aquilegia oxysepala HOM05D001137 ORTHO05D001967 4.1e-19 97.8 75 62.7
arahy.Tifrunner.gnm1.ann1.6BI416 Arachis hypogaea HOM05D001137 ORTHO05D001967 4.1e-19 97.8 83 62.7
MELO3C004231.2 Cucumis melo HOM05D001137 ORTHO05D001967 4.1e-19 97.8 81 64.2
CsaV3_2G006540 Cucumis sativus L. HOM05D001137 ORTHO05D001967 4.1e-19 97.8 81 64.2
Ah.04g160450 Amaranthus hybridus HOM05D001137 ORTHO05D001967 5.3e-19 97.4 74 67.6
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 5.3e-19 97.4 75 64.0
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 5.3e-19 97.4 75 64.0
AUR62000789 Chenopodium quinoa HOM05D001137 ORTHO05D001967 5.3e-19 97.4 74 67.6
Lalb_Chr04g0260691 Lupinus albus HOM05D001137 ORTHO05D001967 5.3e-19 97.4 76 68.4
ATR0706G044 Amborella trichopoda HOM05D001137 ORTHO05D001967 7.0e-19 97.1 75 64.0
AUR62005178 Chenopodium quinoa HOM05D001137 ORTHO05D001967 7.0e-19 97.1 74 66.2
Nitab4.5_0002432g0050 Nicotiana tabacum HOM05D001137 ORTHO05D001967 9.1e-19 96.7 75 66.7
unitig_746.g26860 Utricularia gibba HOM05D001137 ORTHO05D001967 9.1e-19 96.7 72 62.5
Os03g0835600 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D001967 1.2e-18 96.3 69 65.2
CiPaw.07G020200 Carya illinoinensis HOM05D001137 ORTHO05D001967 1.6e-18 95.9 77 61.0
SEGI_30119 Sequoiadendron giganteum HOM05D001137 ORTHO05D001967 1.6e-18 95.9 72 66.7
Ah.06g189620 Amaranthus hybridus HOM05D001137 ORTHO05D001967 2.0e-18 95.5 74 64.9
Glyma.19G234400 Glycine max HOM05D001137 ORTHO05D001967 2.0e-18 95.5 71 69.0
Sed0004131 Sechium edule HOM05D001137 ORTHO05D001967 2.0e-18 95.5 78 65.4
Cfa006613 Carpinus fangiana HOM05D001137 ORTHO05D001967 2.7e-18 95.1 77 61.0
ClCG02G015540 Citrullus lanatus HOM05D001137 ORTHO05D001967 2.7e-18 95.1 78 64.1
QL03p012727 Quercus lobata HOM05D001137 ORTHO05D001967 5.9e-18 94.0 77 62.3
Sed0022056 Sechium edule HOM05D001137 ORTHO05D001967 1.7e-17 92.4 78 62.8
BcaC05g30125 Brassica carinata HOM05D001137 ORTHO05D001967 2.2e-17 92.0 93 59.1
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 2.9e-17 91.7 76 65.8
PSO210G3549 Papaver somniferum HOM05D001137 ORTHO05D001967 3.8e-17 91.3 76 61.8
PSO832G3296 Papaver somniferum HOM05D001137 ORTHO05D001967 3.8e-17 91.3 76 61.8
PGR083G1814 Punica granatum HOM05D001137 ORTHO05D001967 3.8e-17 91.3 75 62.7
Lalb_Chr15g0077291 Lupinus albus HOM05D001137 ORTHO05D001967 1.1e-16 89.7 76 65.8
SEGI_35482 Sequoiadendron giganteum HOM05D001137 ORTHO05D015495 3.6e-15 84.7 68 61.8
arahy.Tifrunner.gnm1.ann1.H0NCP1 Arachis hypogaea HOM05D001137 ORTHO05D001967 2.3e-14 82.0 120 42.5
BcaB04g19269 Brassica carinata HOM05D001643 ORTHO05D001580 2.3e-14 82.0 54 77.8
Mapoly0004s0054 Marchantia polymorpha HOM05D001137 ORTHO05D001967 2.3e-14 82.0 73 58.9
Lj5A442G8 Lonicera japonica HOM05D001137 ORTHO05D001967 3.7e-12 74.7 75 53.3
Haze_04162 Corylus avellana HOM05D001137 ORTHO05D001967 4.1e-11 71.2 132 36.4
CBR_g49333 Chara braunii HOM05D001137 ORTHO05D001967 2.0e-10 68.9 68 50.0
MELO3C000358.2 Cucumis melo HOM05D001137 ORTHO05D015495 3.5e-10 68.2 55 70.9
MELO3C019218.2 Cucumis melo HOM05D001137 ORTHO05D015495 2.9e-09 65.1 53 66.0
MELO3C024609.2 Cucumis melo HOM05D001137 ORTHO05D015495 3.8e-09 64.7 54 63.0
Pp3c14_17400 Physcomitrium patens HOM05D001137 ORTHO05D001967 3.8e-09 64.7 81 42.0
Pp3c14_17403 Physcomitrium patens HOM05D001137 ORTHO05D001967 3.8e-09 64.7 81 42.0
AagrBONN_evm.TU.Sc2ySwM_228.784 Anthoceros agrestis HOM05D001137 ORTHO05D001967 5.0e-09 64.3 66 48.5
MELO3C032927.2 Cucumis melo HOM05D001137 ORTHO05D015495 5.0e-09 64.3 51 66.7
RcHm_v2.0_Chr5g0019041 Rosa chinensis HOM05D001137 ORTHO05D015495 4.2e-08 61.2 56 58.9
Pp3c17_21380 Physcomitrium patens HOM05D001137 ORTHO05D001967 5.5e-08 60.8 78 39.7
MELO3C031209.2 Cucumis melo HOM05D001137 ORTHO05D015495 1.6e-07 59.3 55 63.6
RcHm_v2.0_Chr4g0393251 Rosa chinensis HOM05D001137 ORTHO05D015495 2.1e-07 58.9 54 59.3
SMO272G0035 Selaginella moellendorffii HOM05D001137 ORTHO05D001967 2.7e-07 58.5 71 42.3
PRCOL_00004920 Prasinoderma coloniale HOM05D001137 ORTHO05D001967 8.0e-07 57.0 66 47.0
RcHm_v2.0_Chr4g0397481 Rosa chinensis HOM05D001137 ORTHO05D015495 2.3e-06 55.5 54 55.6


User provided reference genes

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