Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 4.5e-308 1060.4 539 100.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 7.1e-290 1000.0 543 94.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 8.5e-275 949.9 544 89.3
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 6.1e-265 917.1 538 85.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.6e-263 911.8 539 85.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 9.7e-263 909.8 540 85.7
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.6e-260 901.7 551 84.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.8e-259 897.9 540 85.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.1e-257 892.1 543 84.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.6e-252 875.9 542 82.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.9e-252 874.0 483 90.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-250 869.8 540 83.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-250 869.8 479 90.2
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-250 869.8 479 90.2
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 9.4e-250 866.7 540 83.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.6e-249 865.9 540 82.6
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.1e-249 864.0 479 89.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-248 862.4 479 89.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-248 862.1 479 89.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 6.3e-246 854.0 549 80.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.6e-223 778.9 494 76.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.1e-220 769.2 490 75.9
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.5e-220 768.5 533 71.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.0e-220 767.7 551 69.5
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.3e-218 761.5 552 71.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 7.3e-218 760.8 554 70.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.2e-217 760.0 492 75.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.8e-217 758.8 551 70.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 4.7e-217 758.1 477 76.5
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.1e-216 756.9 559 69.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 5.2e-216 754.6 555 70.3
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.2e-216 754.6 560 68.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.5e-215 753.1 563 67.9
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.4e-215 751.9 475 76.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.3e-214 750.0 493 73.0
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.7e-214 749.6 559 68.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.2e-213 745.3 519 69.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.5e-212 741.9 549 68.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.5e-212 741.9 558 68.5
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.8e-212 740.7 554 66.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.5e-210 736.5 497 71.2
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.9e-210 736.1 473 74.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 7.3e-210 734.2 549 68.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.2e-209 733.4 501 71.7
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.8e-209 732.3 560 66.8
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.1e-208 730.3 493 71.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 5.2e-208 728.0 482 72.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 5.8e-207 724.5 478 74.3
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.3e-206 723.4 477 74.6
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.7e-206 723.0 473 72.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.7e-206 723.0 476 72.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.2e-206 722.6 492 70.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.9e-206 722.2 515 69.3
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 6.4e-206 721.1 529 69.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 8.4e-206 720.7 468 73.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.1e-205 720.3 557 65.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-205 720.3 553 66.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.6e-204 716.5 525 69.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 7.8e-204 714.1 548 66.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.3e-203 712.6 467 73.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 3.0e-203 712.2 516 67.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.3e-202 708.8 547 65.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 4.3e-202 708.4 475 71.4
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.2e-201 706.8 476 71.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-201 706.1 570 64.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.7e-201 704.9 514 69.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.4e-200 703.4 563 64.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 4.0e-200 701.8 555 65.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.2e-200 701.4 567 64.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.5e-199 699.9 572 64.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.0e-199 699.5 554 67.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.0e-199 699.5 539 65.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.6e-199 697.6 586 63.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-198 696.8 505 66.3
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-198 696.0 563 63.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.1e-197 693.7 463 71.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.6e-196 689.9 487 69.6
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.1e-196 689.5 473 70.4
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.1e-196 689.5 564 64.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.5e-196 688.7 549 65.4
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.8e-196 687.6 544 66.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-195 687.2 515 67.0
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-195 686.0 515 67.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.9e-195 685.3 549 62.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.5e-194 683.3 572 62.6
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-194 682.6 473 71.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.5e-194 682.6 541 63.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.3e-194 682.2 620 60.6
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.3e-194 682.2 462 69.5
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-194 682.2 515 67.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.3e-194 682.2 574 61.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-193 680.2 481 69.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.3e-193 680.2 592 60.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.3e-193 680.2 552 64.9
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.4e-192 676.0 552 64.5
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.3e-192 674.9 459 71.7
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 9.0e-192 674.1 542 63.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.0e-191 672.9 490 67.1
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.4e-191 672.2 493 67.5
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.5e-191 671.8 458 71.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.6e-191 671.0 549 63.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.7e-190 669.8 497 67.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.1e-189 667.2 552 63.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 9.3e-189 664.1 499 66.5
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.7e-187 657.9 548 61.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-186 656.8 474 67.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.5e-186 656.0 515 64.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.4e-184 649.4 549 62.8
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-182 643.7 486 66.0
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.1e-181 640.6 692 52.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-180 637.1 527 60.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 7.6e-175 617.8 607 57.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.2e-174 616.3 462 64.7
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 6.0e-172 608.2 560 60.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.9e-166 589.3 554 59.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.6e-164 582.4 363 77.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.0e-162 576.6 366 76.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.5e-159 567.0 390 71.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.9e-156 554.7 462 59.7
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 4.5e-151 538.9 556 53.4
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.0e-150 535.4 467 56.3
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 7.4e-146 521.5 361 71.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.2e-145 518.1 493 57.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-144 517.7 461 56.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.4e-141 504.6 523 52.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.7e-138 495.4 361 69.5
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.0e-135 486.9 326 73.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.4e-133 478.0 381 65.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.8e-129 465.7 395 61.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-119 434.1 289 70.6
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.1e-112 409.5 483 47.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.7e-111 406.8 472 47.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 3.9e-110 402.9 366 60.1
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 7.5e-106 388.7 281 65.8
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.5e-103 379.8 243 74.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.2e-95 354.8 219 76.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.7e-94 350.9 215 77.2
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.9e-94 349.7 234 73.5
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 5.1e-94 349.4 306 60.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.6e-94 348.6 216 77.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-90 338.2 274 63.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 7.6e-90 335.5 275 59.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.7e-89 334.3 454 41.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.9e-85 320.9 320 54.1
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-80 305.1 200 70.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.6e-78 295.8 185 78.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 7.3e-77 292.4 468 36.3
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 8.1e-76 288.9 271 51.3
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-66 258.1 170 72.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.0e-63 246.1 282 50.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.3e-60 238.4 484 34.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.7e-60 236.9 184 67.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.3e-54 218.4 152 65.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-51 208.4 277 45.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.2e-49 201.1 139 70.5
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.3e-46 191.0 104 85.6
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 3.9e-46 190.3 157 66.2
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.2e-44 182.6 114 76.3
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-42 178.7 125 64.8
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.5e-42 178.3 325 40.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 8.5e-41 172.6 324 38.9
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.1e-40 172.2 124 65.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.8e-38 164.9 137 56.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 9.4e-32 142.5 88 75.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-28 132.1 182 43.4
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.7e-28 130.6 88 68.2
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.8e-28 130.2 80 73.8
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.3e-28 129.8 77 81.8
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 8.2e-28 129.4 102 65.7
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.4e-27 127.9 76 76.3
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-23 115.5 64 82.8
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.7e-23 114.4 62 83.9
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 4.0e-22 110.5 102 51.0
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 6.8e-22 109.8 100 68.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.3e-20 105.5 77 66.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.2e-20 104.8 64 73.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.8e-20 103.6 84 58.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 5.4e-19 100.1 78 51.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 5.4e-19 100.1 80 62.5
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-15 89.0 64 59.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.1e-15 88.2 62 62.9
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 5.2e-14 83.6 48 79.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.7e-13 80.1 164 37.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.4e-11 74.7 48 75.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-11 73.9 51 64.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.1e-11 72.8 111 43.2
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-07 60.8 155 32.9


User provided reference genes

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