Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.0e-137 493.4 247 100.0
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 1.7e-129 466.1 248 94.8
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 1.7e-129 466.1 248 94.8
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 4.9e-129 464.5 248 94.4
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 5.1e-126 454.5 249 94.4
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 5.1e-126 454.5 247 93.1
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 2.9e-121 438.7 249 89.2
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.1e-119 432.6 250 88.8
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 5.1e-118 427.9 251 90.4
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.5e-117 426.4 252 90.1
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 4.3e-117 424.9 249 89.6
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 4.3e-117 424.9 249 89.6
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 4.3e-117 424.9 249 89.6
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 7.7e-114 414.1 255 83.1
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.3e-108 396.7 260 83.1
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 2.6e-106 389.0 258 78.7
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.9e-104 382.9 257 79.4
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 1.2e-90 337.0 245 71.0
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 3.8e-89 332.0 263 66.9
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 3.8e-89 332.0 250 68.0
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 2.5e-88 329.3 254 68.5
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 5.5e-88 328.2 203 79.3
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 5.5e-88 328.2 203 79.3
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 5.5e-88 328.2 251 68.9
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 7.2e-88 327.8 272 66.2
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.2e-88 327.8 201 78.6
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 9.4e-88 327.4 257 66.1
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.6e-87 325.5 251 68.9
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 4.7e-87 325.1 251 68.9
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 4.7e-87 325.1 260 66.2
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 8.0e-87 324.3 222 71.6
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 8.0e-87 324.3 247 68.8
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.0e-86 322.4 235 69.4
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 4.0e-86 322.0 270 65.2
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.2e-86 321.6 263 66.9
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 1.5e-85 320.1 250 67.2
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 2.0e-85 319.7 249 67.9
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.6e-85 319.3 263 67.7
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 2.6e-85 319.3 223 71.3
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 5.7e-85 318.2 225 72.0
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 7.5e-85 317.8 234 68.4
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 7.5e-85 317.8 263 66.5
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 7.5e-85 317.8 230 70.9
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.3e-84 317.0 263 65.0
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 2.2e-84 316.2 254 66.1
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 2.8e-84 315.8 194 77.3
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.7e-84 315.5 263 65.8
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 4.9e-84 315.1 222 71.2
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 6.3e-84 314.7 222 71.6
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 8.3e-84 314.3 232 68.5
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.1e-83 313.9 205 74.6
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.1e-83 313.9 198 75.3
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 1.8e-83 313.2 237 65.8
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 1.8e-83 313.2 203 73.4
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 1.8e-83 313.2 223 71.7
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 2.4e-83 312.8 253 65.6
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.4e-83 312.8 242 66.5
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.1e-83 312.4 259 64.5
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 3.1e-83 312.4 245 64.9
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 4.1e-83 312.0 222 73.0
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 4.1e-83 312.0 198 74.7
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 5.4e-83 311.6 250 64.4
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 5.4e-83 311.6 263 64.3
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 5.4e-83 311.6 189 77.2
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.2e-82 310.5 248 64.1
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 1.2e-82 310.5 237 65.8
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 2.0e-82 309.7 226 68.6
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 2.0e-82 309.7 251 66.5
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 3.5e-82 308.9 204 75.5
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 4.5e-82 308.5 191 78.5
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 5.9e-82 308.1 225 68.9
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 1.7e-81 306.6 279 60.2
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.7e-81 306.6 222 72.1
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.3e-81 306.2 273 64.1
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.9e-81 305.8 263 62.7
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 5.0e-81 305.1 252 65.5
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 8.6e-81 304.3 261 62.5
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 4.2e-80 302.0 257 65.4
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 5.5e-80 301.6 198 74.2
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 9.5e-80 300.8 259 62.2
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 9.5e-80 300.8 259 61.8
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.2e-79 300.4 247 64.8
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.2e-79 300.4 255 63.1
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 8.0e-79 297.7 221 67.4
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 8.0e-79 297.7 193 75.6
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 1.4e-78 297.0 223 68.2
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 2.3e-78 296.2 277 58.8
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 3.0e-78 295.8 225 67.6
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 3.0e-78 295.8 230 65.7
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.6e-77 292.7 174 79.3
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.3e-76 290.4 202 70.3
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 1.3e-76 290.4 186 75.8
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 2.4e-75 286.2 200 69.5
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.2e-74 283.9 189 73.0
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 2.7e-74 282.7 222 66.2
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.3e-73 280.4 200 68.0
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 1.5e-72 276.9 252 57.1
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 4.3e-72 275.4 257 59.5
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 2.1e-71 273.1 260 56.2
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.4e-70 270.4 219 62.6
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.7e-66 256.1 137 84.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 2.3e-65 253.1 187 71.1
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 4.3e-64 248.8 248 56.5
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 4.7e-63 245.4 193 65.8
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 6.0e-58 228.4 188 64.9
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 2.3e-57 226.5 122 86.1
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 6.0e-50 201.8 234 49.6
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 8.1e-47 191.4 200 50.5
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 1.3e-44 184.1 190 53.2
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.7e-44 183.7 194 55.7
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 2.9e-44 183.0 105 82.9
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 5.3e-38 162.2 214 45.3
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 1.3e-36 157.5 146 54.1
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.5e-32 144.1 105 70.5
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 5.6e-32 142.1 103 71.8
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 2.4e-30 136.7 183 43.2
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.0e-29 133.7 71 87.3
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 3.3e-24 116.3 61 83.6
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.5e-20 102.1 87 59.8
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 5.5e-19 99.0 130 48.5
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 2.7e-18 96.7 56 82.1
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 2.5e-16 90.1 101 51.5
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.6e-15 87.4 50 74.0
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 2.8e-15 86.7 68 64.7
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 1.1e-14 84.7 75 56.0
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 9.3e-11 71.6 96 45.8
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 2.1e-10 70.5 104 43.3
BcaC02g11492 Brassica carinata HOM05D001205 ORTHO05D001087 2.3e-09 67.0 46 73.9
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 2.3e-09 67.0 63 58.7
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 1.8e-06 57.4 57 52.6
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 6.9e-06 55.5 43 55.8


User provided reference genes

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