Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.9e-258 893.6 439 100.0
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 8.8e-246 853.2 443 94.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.2e-244 848.6 443 93.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.2e-244 848.6 444 93.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 4.8e-244 847.4 443 93.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.5e-242 840.9 440 93.2
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 7.7e-242 840.1 451 92.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.7e-241 839.0 442 92.8
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.5e-241 837.0 443 92.6
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.5e-241 836.6 443 92.1
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.5e-240 835.1 443 91.9
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.6e-239 832.4 444 92.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 6.1e-239 830.5 443 91.9
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.0e-238 829.7 446 91.0
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.3e-238 828.6 441 91.8
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.7e-238 827.0 443 91.6
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.3e-237 824.7 444 91.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.4e-235 819.3 439 91.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.8e-228 795.0 448 87.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.5e-224 781.9 444 87.2
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 8.9e-222 773.5 445 84.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.8e-220 768.5 411 91.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 9.2e-219 763.5 443 82.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 5.0e-217 757.7 448 82.8
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 9.5e-216 753.4 441 83.4
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.2e-215 753.1 441 83.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.2e-215 753.1 447 82.3
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.6e-215 752.7 445 82.5
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.1e-215 752.3 447 82.1
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.8e-215 751.9 447 82.1
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.1e-215 750.7 447 82.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 8.0e-215 750.4 442 82.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 8.0e-215 750.4 438 83.3
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.0e-215 750.4 447 81.9
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-214 749.6 447 81.7
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-214 749.6 447 81.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.0e-214 748.0 446 82.5
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 8.9e-214 746.9 446 81.8
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 8.9e-214 746.9 438 82.4
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.6e-213 745.3 443 81.9
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.4e-213 744.6 443 82.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 9.8e-213 743.4 445 82.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.9e-212 741.9 443 80.1
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-212 741.5 443 82.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-212 741.5 443 82.4
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 3.7e-212 741.5 446 81.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 4.9e-212 741.1 445 81.1
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 6.4e-212 740.7 445 79.8
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.4e-211 739.6 449 80.2
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.1e-211 738.0 444 79.5
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 5.4e-211 737.6 444 80.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 9.2e-211 736.9 441 81.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 9.2e-211 736.9 442 81.2
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.0e-210 735.7 444 80.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.0e-210 735.7 443 81.5
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.7e-210 735.3 443 81.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.5e-210 734.9 445 80.9
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.5e-210 734.9 441 80.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 6.0e-210 734.2 444 81.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 6.0e-210 734.2 445 80.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.0e-209 733.4 444 79.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.3e-209 733.0 439 82.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-209 733.0 443 81.3
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.7e-209 732.6 444 80.2
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 3.9e-209 731.5 444 80.6
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.9e-209 731.5 483 76.2
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 5.0e-209 731.1 445 80.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 5.0e-209 731.1 447 80.1
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 5.0e-209 731.1 443 78.8
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 8.6e-209 730.3 444 80.0
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.1e-208 729.9 442 79.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-208 729.2 443 81.3
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.3e-208 728.4 439 80.6
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.3e-208 728.4 442 81.2
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.3e-208 728.0 443 79.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.6e-208 727.6 441 80.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 9.5e-208 726.9 442 80.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.2e-207 726.5 445 80.2
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.1e-207 725.7 443 79.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.1e-207 725.7 479 76.2
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.8e-207 725.3 444 79.5
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.1e-206 723.4 443 79.7
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.1e-206 723.4 442 80.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-206 722.6 444 80.0
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.8e-206 722.6 442 77.8
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.8e-206 722.6 442 79.9
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.3e-206 722.2 442 80.8
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 5.2e-206 721.1 445 80.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 6.8e-206 720.7 438 80.1
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.2e-205 719.9 443 79.0
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.2e-205 719.9 444 79.1
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.5e-205 719.5 455 77.1
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.5e-205 719.5 444 79.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.4e-205 718.4 440 80.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.4e-205 718.0 442 80.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.4e-205 718.0 447 78.3
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.8e-205 716.8 459 76.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.4e-204 714.1 442 78.7
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.9e-203 712.6 442 79.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 9.2e-203 710.3 442 79.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.0e-202 707.6 442 78.7
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.1e-201 704.5 446 78.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.6e-201 703.7 428 79.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.6e-200 701.0 441 76.9
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-198 696.8 442 76.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.1e-198 696.8 436 77.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.1e-198 695.3 442 78.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 4.9e-196 688.0 467 74.3
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.5e-194 681.8 435 75.9
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.6e-193 677.2 441 75.1
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.5e-192 676.4 447 75.2
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 4.2e-187 658.3 443 72.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.1e-186 656.0 400 78.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.9e-179 632.9 438 68.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.3e-176 622.1 439 71.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.9e-172 609.0 383 77.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-170 600.9 385 77.7
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.3e-168 595.5 337 85.2
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 8.2e-159 564.3 442 67.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.6e-157 557.8 430 67.7
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.1e-155 553.9 463 60.3
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.1e-152 543.9 348 77.9
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 3.7e-151 538.9 444 64.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.4e-150 536.2 382 70.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.0e-149 533.1 394 69.8
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.1e-142 510.8 339 75.2
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.9e-142 508.1 437 63.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.7e-130 468.8 252 90.5
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.2e-127 459.9 485 50.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.7e-125 451.4 243 88.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.1e-114 415.2 396 54.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.2e-107 391.7 301 66.1
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.5e-104 381.7 228 80.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.9e-97 358.2 434 47.2
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 4.4e-96 355.9 193 87.6
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.9e-95 352.4 193 85.5
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.9e-89 331.6 237 70.0
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.7e-85 320.1 312 57.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 7.8e-85 318.5 234 67.1
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.6e-84 315.1 193 77.2
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.9e-78 297.4 263 64.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.7e-77 293.5 444 42.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 3.6e-66 256.5 297 53.5
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-59 235.0 202 63.9
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.1e-58 230.7 146 78.1
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.5e-51 208.0 159 66.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.7e-47 194.5 150 64.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 6.7e-44 182.6 234 45.3
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 9.6e-43 178.7 151 64.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 3.9e-36 156.8 114 66.7
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.4e-33 148.3 130 59.2
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.8e-31 140.2 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.6e-29 134.8 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 9.7e-27 125.6 85 72.9
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.8e-26 124.0 162 47.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.9e-22 111.3 51 100.0
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 9.4e-22 109.0 51 96.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.0e-19 101.3 52 88.5
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.1e-17 94.0 93 53.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 4.7e-13 80.1 72 63.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 8.0e-13 79.3 60 68.3
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.3e-10 72.0 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.2e-10 71.2 36 86.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.6e-08 65.1 41 75.6
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.0e-07 62.4 30 83.3
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 2.5e-06 57.8 38 76.3


User provided reference genes

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