Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 0.0e+00 1676.4 899 100.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 0.0e+00 1377.8 895 84.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1315.8 897 81.7
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1315.8 897 81.7
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 0.0e+00 1312.4 903 80.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1310.4 895 81.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1308.9 897 81.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 0.0e+00 1305.0 903 80.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1275.8 899 80.6
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1274.6 899 80.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1269.2 899 80.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 0.0e+00 1265.8 906 78.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1259.6 899 79.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1255.7 899 79.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 0.0e+00 1255.4 904 79.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1253.8 904 79.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 0.0e+00 1100.1 918 68.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.4e-300 1033.9 916 68.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.1e-266 921.8 846 65.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.0e-256 889.0 908 58.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-243 845.9 586 79.9
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 5.2e-176 622.5 922 47.1
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.4e-175 619.4 920 47.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.5e-172 609.8 943 46.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 7.7e-172 608.6 948 44.6
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.6e-169 599.7 954 46.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.0e-168 598.2 918 46.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-168 597.8 940 44.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-168 597.4 930 45.8
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-168 597.4 919 46.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-168 595.5 922 46.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 8.8e-168 595.1 962 44.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 5.7e-167 592.4 976 44.9
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.7e-166 590.9 932 45.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.8e-166 590.1 946 44.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-165 588.2 929 46.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.1e-165 586.6 934 44.5
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.4e-165 585.9 960 44.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.1e-165 585.1 948 43.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-164 584.7 953 43.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 5.9e-164 582.4 956 44.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 6.6e-163 578.9 945 43.4
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-162 577.4 949 42.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.5e-162 577.0 893 43.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-162 576.2 937 42.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.6e-161 574.3 939 42.9
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.6e-161 573.2 960 43.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.8e-160 570.9 942 43.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-159 566.6 958 44.2
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-158 563.9 840 43.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.3e-158 562.0 937 42.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-157 560.8 840 44.2
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.4e-157 560.5 1004 40.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-156 556.2 938 42.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 7.8e-156 555.4 918 43.8
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.8e-156 555.4 944 41.9
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.6e-155 552.0 840 43.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.9e-154 550.8 947 43.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.3e-154 550.1 931 42.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.0e-153 545.4 930 44.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.0e-152 543.1 897 43.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 6.8e-152 542.3 908 42.6
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 9.8e-151 538.5 891 43.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.2e-150 537.3 948 42.3
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.7e-150 536.6 672 51.8
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.9e-150 536.2 979 42.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 8.3e-150 535.4 953 42.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-149 535.0 909 43.7
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 7.0e-149 532.3 867 44.6
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 7.0e-149 532.3 906 43.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.2e-148 531.6 947 41.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.7e-148 530.4 953 42.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.7e-148 530.4 867 44.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.3e-147 527.3 899 43.2
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.0e-147 526.9 850 44.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 6.6e-147 525.8 954 41.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.5e-146 524.6 930 41.6
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.2e-145 521.5 987 41.4
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.6e-145 520.0 916 40.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.7e-145 519.6 944 42.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 6.2e-145 519.2 922 41.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.1e-144 518.5 903 43.0
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.4e-144 518.1 874 41.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-144 518.1 823 42.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.2e-142 510.8 917 42.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.3e-142 508.8 823 42.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 5.4e-141 506.1 942 41.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.5e-140 503.4 853 43.0
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.5e-140 503.4 905 43.6
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.6e-140 503.1 943 42.4
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.0e-140 502.7 863 42.4
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 7.8e-140 502.3 926 41.9
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.8e-140 502.3 687 48.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-139 501.5 980 40.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.9e-138 497.7 915 41.9
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 6.2e-137 492.7 922 40.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 8.1e-137 492.3 601 52.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.1e-136 491.9 968 39.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.4e-136 491.5 1032 38.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 5.2e-136 489.6 943 39.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.9e-136 488.8 941 40.8
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.5e-135 488.0 934 41.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.4e-135 486.9 763 45.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.4e-135 486.9 893 42.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.4e-135 486.9 960 40.6
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.9e-133 481.1 922 41.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.1e-132 477.6 922 40.9
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.6e-132 476.5 893 41.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.7e-131 474.6 906 40.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.1e-131 473.0 874 41.6
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 7.3e-130 469.2 940 39.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-128 465.3 673 47.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.4e-127 459.9 886 41.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-125 453.8 903 41.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-124 451.4 935 39.7
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 6.0e-124 449.5 868 40.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.7e-123 448.0 910 40.0
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.3e-122 443.7 903 39.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.3e-122 443.4 897 39.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.8e-120 438.0 883 39.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.3e-120 436.4 973 39.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.8e-118 430.3 860 38.6
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.1e-117 426.0 894 40.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 4.6e-116 423.3 959 37.6
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.1e-113 412.5 918 38.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 5.4e-109 399.8 905 37.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.1e-108 397.9 901 38.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.6e-108 396.7 882 37.8
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 7.9e-108 396.0 876 38.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.3e-106 390.2 826 39.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.7e-105 387.1 806 35.7
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.3e-104 383.3 881 38.0
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 6.9e-104 382.9 693 43.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 6.7e-99 366.3 845 34.8
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-98 364.4 690 39.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.5e-95 355.1 802 37.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.8e-95 353.2 611 41.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.1e-91 340.1 495 47.3
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.5e-87 327.0 854 33.0
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.5e-85 321.2 1017 32.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.7e-83 313.2 683 38.7
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.7e-81 308.5 553 39.1
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-80 304.3 452 45.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.9e-79 300.1 859 35.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.1e-77 295.8 990 31.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.5e-77 293.5 861 33.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-71 274.2 795 32.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-71 273.5 418 47.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.7e-68 263.8 782 31.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 7.5e-66 256.5 403 41.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.7e-66 256.1 739 33.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 7.2e-61 240.0 275 50.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-59 235.0 326 45.1
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 9.1e-56 223.0 771 31.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-50 205.7 496 37.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 9.5e-45 186.4 397 38.0
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 3.6e-44 184.5 411 38.4
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.3e-41 173.3 275 46.9
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-38 166.0 218 46.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.0e-38 164.1 539 31.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 3.1e-35 154.8 249 46.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.1e-32 146.4 111 61.3
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.7e-31 141.7 437 26.8
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.2e-27 127.5 208 42.3
A09p03500 Brassica napus HOM05D003655 ORTHO05D041909 1.3e-25 122.9 102 69.6
BraA09t35988Z Brassica rapa HOM05D003655 ORTHO05D041909 1.3e-25 122.9 102 69.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.0e-22 113.2 102 54.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-22 113.2 154 44.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-22 113.2 348 32.2
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-19 102.4 255 38.0
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.4e-16 92.0 186 35.5
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-14 85.9 270 31.1
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.3e-13 81.6 379 27.2
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.7e-12 77.8 42 81.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 6.2e-12 77.4 187 31.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-07 63.2 79 43.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.2e-07 63.2 35 68.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 5.1e-06 57.8 79 59.5


User provided reference genes

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