Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 3.6e-64 248.1 122 100.0
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 8.9e-47 190.3 110 85.5
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 7.5e-46 187.2 110 81.8
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 2.2e-45 185.7 110 80.9
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 3.7e-45 184.9 110 81.8
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 4.9e-45 184.5 110 82.7
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 8.3e-45 183.7 113 85.0
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 2.7e-43 178.7 113 81.4
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 2.7e-43 178.7 113 81.4
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 2.7e-43 178.7 113 81.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 2.7e-43 178.7 113 81.4
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 1.4e-39 166.4 112 80.4
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 4.0e-39 164.9 108 78.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 5.8e-38 161.0 114 74.6
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 7.6e-38 160.6 104 75.0
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 4.3e-33 144.8 108 64.8
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 2.1e-32 142.5 114 65.8
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 3.8e-29 131.7 110 60.9
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 3.8e-29 131.7 106 63.2
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 4.9e-29 131.3 105 62.9
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 8.4e-29 130.6 112 59.8
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.1e-28 130.2 115 58.3
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.4e-28 129.8 90 67.8
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.9e-28 129.4 105 62.9
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.9e-28 129.4 124 58.1
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.9e-28 129.4 94 64.9
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.9e-28 129.4 98 66.3
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 4.2e-28 128.3 110 59.1
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 4.2e-28 128.3 94 63.8
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 5.4e-28 127.9 100 61.0
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 9.3e-28 127.1 98 64.3
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 9.3e-28 127.1 116 54.3
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 9.3e-28 127.1 94 62.8
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 9.3e-28 127.1 98 65.3
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 9.3e-28 127.1 99 60.6
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.2e-27 126.7 124 56.5
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.2e-27 126.7 124 56.5
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 1.6e-27 126.3 116 56.0
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.6e-27 126.3 96 60.4
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 2.1e-27 125.9 121 54.5
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.7e-27 125.6 94 61.7
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 6.0e-27 124.4 115 54.8
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 6.0e-27 124.4 94 60.6
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 7.8e-27 124.0 92 65.2
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.0e-26 123.6 100 63.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 1.3e-26 123.2 105 61.9
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 2.3e-26 122.5 99 59.6
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.0e-26 122.1 98 61.2
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 3.9e-26 121.7 104 60.6
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 5.1e-26 121.3 109 56.0
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 5.1e-26 121.3 87 67.8
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 6.6e-26 120.9 119 55.5
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 6.6e-26 120.9 119 55.5
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 8.7e-26 120.6 107 57.9
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.5e-25 119.8 100 61.0
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.5e-25 119.8 90 65.6
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.9e-25 119.4 110 58.2
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 2.5e-25 119.0 107 55.1
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 3.3e-25 118.6 113 54.9
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 4.3e-25 118.2 123 51.2
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 4.3e-25 118.2 105 58.1
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 4.3e-25 118.2 100 58.0
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 4.3e-25 118.2 117 52.1
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 5.6e-25 117.9 121 52.1
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 7.3e-25 117.5 111 55.9
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 7.3e-25 117.5 87 66.7
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 7.3e-25 117.5 97 58.8
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 9.6e-25 117.1 89 59.6
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.3e-24 116.7 75 78.7
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.3e-24 116.7 115 55.7
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 1.3e-24 116.7 99 54.5
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 1.3e-24 116.7 115 54.8
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 2.1e-24 115.9 118 54.2
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.8e-24 115.5 116 52.6
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 3.6e-24 115.2 101 58.4
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.6e-24 115.2 89 61.8
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.6e-24 115.2 89 61.8
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.6e-24 115.2 89 61.8
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 3.6e-24 115.2 114 52.6
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 6.2e-24 114.4 99 57.6
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 8.1e-24 114.0 98 59.2
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 3.1e-23 112.1 104 56.7
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 4.0e-23 111.7 117 47.9
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 4.0e-23 111.7 118 58.5
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 4.0e-23 111.7 81 66.7
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 5.3e-23 111.3 119 50.4
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.3e-23 111.3 86 61.6
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 6.9e-23 110.9 98 57.1
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 6.9e-23 110.9 133 48.1
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 9.0e-23 110.5 104 53.8
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 9.0e-23 110.5 138 47.8
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.2e-22 110.2 98 54.1
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 1.5e-22 109.8 100 56.0
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.0e-22 109.4 84 60.7
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 2.6e-22 109.0 90 60.0
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 3.4e-22 108.6 112 52.7
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 4.4e-22 108.2 78 64.1
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 7.6e-22 107.5 77 63.6
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.3e-21 106.7 114 51.8
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 3.8e-21 105.1 85 63.5
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 8.4e-21 104.0 77 62.3
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.4e-20 103.2 119 47.9
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.2e-20 102.1 97 51.5
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 4.2e-20 101.7 87 52.9
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.2e-19 100.1 123 44.7
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 6.0e-19 97.8 96 55.2
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.3e-18 95.9 121 48.8
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 3.0e-18 95.5 125 47.2
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 3.3e-17 92.0 77 55.8
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 3.3e-17 92.0 88 53.4
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 2.8e-16 89.0 88 50.0
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 4.8e-16 88.2 71 56.3
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 1.4e-15 86.7 116 37.9
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 4.5e-14 81.6 89 48.3
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.3e-13 80.1 103 44.7
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 3.8e-13 78.6 92 48.9
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.9e-12 76.3 69 58.0
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 2.4e-12 75.9 72 52.8
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 7.1e-12 74.3 85 51.8
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 2.7e-11 72.4 73 47.9
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 3.5e-11 72.0 92 38.0
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 4.6e-11 71.6 88 36.4
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 6.0e-11 71.2 85 49.4
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 1.5e-09 66.6 73 47.9
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 3.3e-09 65.5 86 43.0
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 4.8e-08 61.6 65 50.8
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 1.2e-06 57.0 59 42.4
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.2e-06 57.0 88 34.1


User provided reference genes

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