Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 0.0e+00 2069.7 1333 100.0
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 0.0e+00 1609.0 1383 75.1
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 0.0e+00 1552.0 1393 73.4
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 0.0e+00 1545.0 1377 74.9
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 0.0e+00 1520.0 1377 74.2
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 0.0e+00 1515.7 1388 75.8
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1492.2 1370 76.0
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1471.1 1381 73.8
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 0.0e+00 1468.0 1382 75.0
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 0.0e+00 1466.4 1382 74.0
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 1461.0 1374 74.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 0.0e+00 1461.0 1374 74.4
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 0.0e+00 1360.9 1369 70.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 0.0e+00 1241.9 1409 65.9
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-246 857.4 1266 49.5
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 2.3e-241 840.1 1492 44.8
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 7.0e-238 828.6 1474 44.6
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 3.5e-237 826.2 1469 46.1
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.3e-235 819.3 1484 47.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.6e-234 817.4 1430 46.1
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 3.6e-234 816.2 1489 43.7
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.9e-230 803.9 1496 44.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 2.1e-229 800.4 1489 43.8
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.7e-228 797.3 1457 49.6
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.2e-226 791.2 1472 43.8
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 2.1e-226 790.4 1490 43.7
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.7e-226 789.3 1470 43.5
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.2e-226 788.9 1472 43.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 8.1e-226 788.5 1562 42.9
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.4e-225 787.7 1470 43.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.8e-225 787.3 1479 43.4
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.5e-224 784.3 1485 46.9
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.3e-223 781.2 1492 42.5
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.2e-223 780.4 1457 48.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.9e-223 780.0 1464 41.0
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 6.0e-221 772.3 1516 42.7
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.0e-220 770.0 1500 44.6
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 3.9e-220 769.6 1517 46.0
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 8.6e-220 768.5 1453 43.4
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.5e-219 767.7 1483 43.2
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 3.6e-218 763.1 1495 44.8
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.2e-218 762.3 1492 42.6
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 8.9e-217 758.4 1484 43.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.0e-216 757.3 1522 40.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 5.8e-216 755.7 1476 43.4
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 7.6e-216 755.4 1525 47.1
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 2.9e-215 753.4 1522 43.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.3e-212 744.6 1465 42.8
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 5.1e-212 742.7 1443 45.8
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 6.6e-212 742.3 1518 43.3
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 6.2e-210 735.7 1526 42.4
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.1e-209 734.9 1277 45.6
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.4e-209 733.8 1497 46.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 5.3e-209 732.6 1477 43.7
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.0e-208 730.7 1498 42.5
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.7e-207 727.6 1517 46.7
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 6.4e-207 725.7 1555 41.9
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.2e-206 723.0 1543 42.9
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 5.4e-206 722.6 1484 42.0
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.1e-205 720.7 1473 41.5
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.7e-204 715.7 1476 41.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.2e-200 704.9 1460 44.5
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 5.8e-200 702.6 1554 39.9
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 3.2e-198 696.8 1503 42.8
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 5.1e-196 689.5 1284 45.7
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.3e-195 686.8 708 59.9
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.3e-194 684.9 1480 39.4
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 9.0e-193 678.7 1448 42.3
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 4.2e-190 669.8 1528 39.8
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.6e-189 666.4 1473 39.9
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.0e-189 666.0 1476 41.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.0e-188 665.2 1452 40.5
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.3e-188 664.8 1555 38.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.5e-187 661.4 1407 41.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.6e-186 657.9 1485 42.9
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.2e-186 657.5 1483 42.8
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.8e-186 657.1 1449 41.5
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 8.2e-186 655.6 1490 38.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.8e-183 646.7 1379 40.7
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 3.0e-180 637.1 1691 38.9
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 8.7e-180 635.6 1448 43.2
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.1e-177 628.6 1585 41.1
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.4e-177 628.2 1475 42.4
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.1e-177 627.1 1205 44.6
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 5.3e-177 626.3 1503 36.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 5.1e-172 609.8 1464 41.2
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 4.5e-168 596.7 1483 38.7
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 8.5e-167 592.4 1538 38.8
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.1e-165 587.8 1313 40.3
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 8.8e-156 555.8 1443 37.5
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.4e-155 553.5 1240 37.6
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.0e-152 544.7 1418 41.6
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 5.9e-152 543.1 1420 36.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.9e-151 540.8 1428 37.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.5e-139 501.9 751 45.9
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.5e-136 490.7 597 56.8
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.2e-133 482.3 1303 40.7
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.5e-126 458.0 1507 34.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.3e-126 457.2 1194 38.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.4e-124 452.2 1354 35.9
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 3.0e-119 434.5 1396 39.0
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.2e-117 426.8 1279 34.2
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.9e-114 417.9 1153 32.0
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 3.1e-108 397.9 769 43.6
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 3.5e-104 384.4 1336 32.7
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.1e-96 358.6 737 42.5
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.6e-88 332.4 735 43.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 3.5e-88 331.3 1280 35.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.5e-75 289.3 570 37.0
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.7e-58 232.6 1413 25.6
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.4e-57 229.6 878 27.3
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 6.7e-55 220.7 1286 27.8
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 4.1e-52 211.5 1275 26.7
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 8.5e-50 203.8 1254 25.8
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 3.6e-48 198.4 279 38.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 8.8e-47 193.7 428 49.5
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.0e-35 156.0 789 31.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.4e-31 143.3 419 43.2
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.3e-29 136.7 364 34.9
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.2e-29 136.0 177 42.9
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.4e-28 132.5 74 86.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 4.1e-28 131.7 92 66.3
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 5.4e-28 131.3 291 37.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-26 126.3 133 56.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.6e-26 124.0 90 70.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 8.6e-26 124.0 110 62.7
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 3.0e-23 115.5 263 35.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.4e-22 111.7 288 38.9
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.1e-20 107.1 61 83.6
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 7.0e-20 104.4 295 36.9
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.3e-17 95.1 108 47.2
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 7.5e-14 84.3 98 50.0
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.7e-13 82.0 124 44.4
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 6.4e-13 81.3 63 68.3
A02p33240 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-12 80.1 151 48.3
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.4e-12 80.1 234 26.5
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 3.0e-10 72.4 115 45.2
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.5e-09 69.3 71 49.3
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.5e-09 69.3 60 51.7
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-08 66.2 44 65.9
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 8.0e-08 64.3 353 24.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-07 63.9 50 58.0
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.4e-07 63.5 87 42.5


User provided reference genes

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