Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g10650 Schrenkiella parvula HOM05D001817 ORTHO05D001647 1.2e-48 196.1 90 100.0
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.4e-25 118.6 118 52.5
AL7G19750 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.3e-23 112.1 117 49.6
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 1.5e-22 109.4 118 46.6
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 1.5e-22 109.4 118 46.6
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 7.3e-22 107.1 121 44.6
AT4G32110 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 9.5e-22 106.7 118 46.6
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-21 105.5 118 44.9
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 2.1e-21 105.5 118 44.9
AT4G32105 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 6.2e-21 104.0 118 47.5
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 8.1e-21 103.6 120 45.0
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 2.4e-20 102.1 118 47.5
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 1.5e-19 99.4 119 45.4
AT4G32100 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 3.4e-19 98.2 120 47.5
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 9.9e-19 96.7 109 49.5
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 9.9e-19 96.7 121 43.8
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-17 91.7 119 40.3
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-17 91.7 119 40.3
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 3.2e-17 91.7 119 40.3
BolC1t00680H Brassica oleracea HOM05D001817 ORTHO05D001647 4.2e-17 91.3 131 42.0
AL7G19780 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 5.4e-17 90.9 103 47.6
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 5.4e-17 90.9 119 42.0
C01p07490 Brassica napus HOM05D001817 ORTHO05D001647 7.1e-17 90.5 121 39.7
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 3.5e-16 88.2 102 43.1
CARHR240020 Cardamine hirsuta HOM05D001817 ORTHO05D001647 3.5e-16 88.2 118 44.1
A01p06730 Brassica napus HOM05D001817 ORTHO05D001647 6.0e-16 87.4 121 38.0
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 6.0e-16 87.4 126 41.3
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-15 86.7 119 41.2
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-15 86.7 119 41.2
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-15 86.7 119 41.2
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.3e-15 85.5 120 45.0
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 1.9e-14 82.4 105 44.8
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.5e-14 82.0 97 45.4
A02p29320 Brassica napus HOM05D001817 ORTHO05D001647 5.6e-14 80.9 113 42.5
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 7.3e-14 80.5 104 44.2
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 7.3e-14 80.5 104 44.2
A02p29330 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-13 79.7 113 41.6
BcaB07g30432 Brassica carinata HOM05D001817 ORTHO05D001647 2.1e-13 79.0 113 38.9
BcaB07g30433 Brassica carinata HOM05D001817 ORTHO05D001647 2.8e-13 78.6 117 43.6
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 3.6e-13 78.2 116 35.3
Sp7g29900 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.7e-13 77.8 131 36.6
C02p46550 Brassica napus HOM05D001817 ORTHO05D001647 6.2e-13 77.4 116 42.2
A02p29300 Brassica napus HOM05D001817 ORTHO05D001647 8.1e-13 77.0 116 43.1
BcaC03g16784 Brassica carinata HOM05D001817 ORTHO05D001647 1.4e-12 76.3 116 41.4
BcaC03g16785 Brassica carinata HOM05D001817 ORTHO05D001647 1.4e-12 76.3 113 40.7
C02p46580 Brassica napus HOM05D001817 ORTHO05D001647 6.9e-12 73.9 113 39.8
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 6.9e-12 73.9 119 35.3
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 2.0e-11 72.4 117 33.3
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 2.0e-11 72.4 119 35.3
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 2.0e-11 72.4 118 33.1
BcaC09g51932 Brassica carinata HOM05D001817 ORTHO05D001647 3.4e-11 71.6 106 37.7
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 3.4e-11 71.6 121 34.7
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 5.8e-11 70.9 121 33.9
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 7.6e-11 70.5 119 31.9
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 9.9e-11 70.1 120 34.2
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 1.7e-10 69.3 120 31.7
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 2.2e-10 68.9 121 31.4
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.2e-10 68.9 117 33.3
Glyma.09G085400 Glycine max HOM05D001817 ORTHO05D001647 3.8e-10 68.2 119 34.5
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.8e-10 68.2 115 32.2
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 3.8e-10 68.2 119 31.9
SpUn0983_0010 Schrenkiella parvula HOM05D001817 ORTHO05D001647 3.8e-10 68.2 49 63.3
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 3.8e-10 68.2 118 32.2
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 3.8e-10 68.2 115 31.3
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 8.4e-10 67.0 122 32.8
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 1.1e-09 66.6 118 34.7
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-09 66.6 115 31.3
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 1.4e-09 66.2 121 36.4
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 1.9e-09 65.9 117 32.5
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 1.9e-09 65.9 117 32.5
SpUn0983_0020 Schrenkiella parvula HOM05D001817 ORTHO05D001647 3.2e-09 65.1 102 38.2
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.4e-09 64.3 105 33.3
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 7.1e-09 63.9 119 32.8
Lalb_Chr21g0316211 Lupinus albus HOM05D001817 ORTHO05D001647 7.1e-09 63.9 116 31.9
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-08 62.8 119 32.8
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.6e-08 62.8 114 32.5
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 1.6e-08 62.8 117 34.2
C01p07500 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-08 62.4 50 52.0
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 2.1e-08 62.4 115 34.8
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 2.1e-08 62.4 120 31.7
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.1e-08 62.4 120 31.7
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.1e-08 62.4 114 32.5
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 2.1e-08 62.4 120 31.7
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 2.7e-08 62.0 119 32.8
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.7e-08 62.0 119 32.8
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 3.5e-08 61.6 118 32.2
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.5e-08 61.6 119 31.9
arahy.Tifrunner.gnm1.ann1.P3P3AQ Arachis hypogaea HOM05D001817 ORTHO05D001647 4.6e-08 61.2 119 32.8
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 4.6e-08 61.2 101 30.7
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 6.0e-08 60.8 121 32.2
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 6.0e-08 60.8 111 32.4
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 7.8e-08 60.5 119 31.1
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 7.8e-08 60.5 119 31.1
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 1.0e-07 60.1 124 33.1
CARHR240010 Cardamine hirsuta HOM05D001817 ORTHO05D001647 1.3e-07 59.7 50 60.0
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 1.3e-07 59.7 113 31.9
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 1.3e-07 59.7 115 31.3
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 1.7e-07 59.3 115 30.4
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.3e-07 58.9 100 31.0
Glyma.13G199700 Glycine max HOM05D001817 ORTHO05D001647 2.3e-07 58.9 115 33.9
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 3.0e-07 58.5 116 31.0
FvH4_2g28701 Fragaria vesca HOM05D001817 ORTHO05D001647 3.9e-07 58.2 101 30.7
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 3.9e-07 58.2 119 30.3
FAN24G3294 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.1e-07 57.8 101 30.7
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 6.6e-07 57.4 100 34.0
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 6.6e-07 57.4 117 29.1
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 8.7e-07 57.0 96 32.3
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 8.7e-07 57.0 98 31.6
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 1.1e-06 56.6 121 30.6
VMungo0720G3158 Vigna mungo HOM05D001817 ORTHO05D001647 1.5e-06 56.2 115 27.8
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 1.9e-06 55.8 120 30.0
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 3.3e-06 55.1 100 31.0
Lj4g0020170 Lotus japonicus HOM05D001817 ORTHO05D001647 3.3e-06 55.1 113 29.2
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.3e-06 54.7 85 31.8
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.6e-06 54.3 119 29.4
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 7.3e-06 53.9 119 26.9
C02p46590 Brassica napus HOM05D001817 ORTHO05D028283 9.6e-06 53.5 63 47.6
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 9.6e-06 53.5 111 29.7


User provided reference genes

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