Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 4.0e-135 485.0 281 100.0
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.9e-116 422.9 290 89.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 5.5e-116 421.4 283 85.2
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 5.1e-114 414.8 281 88.6
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 5.1e-114 414.8 281 88.6
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.5e-113 413.3 281 87.9
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.9e-113 412.9 281 87.9
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 5.9e-110 401.4 301 82.1
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 5.0e-109 398.3 285 87.7
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 6.5e-101 371.3 279 75.3
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.1e-100 370.5 279 80.3
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 5.5e-100 368.2 286 78.0
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 1.2e-99 367.1 280 75.4
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.1e-91 339.7 269 78.1
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.5e-68 263.8 181 75.1
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.7e-67 258.8 182 73.1
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.0e-67 258.1 182 74.7
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 6.8e-66 255.0 180 73.9
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.2e-65 254.2 180 72.8
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 1.5e-65 253.8 179 74.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 2.0e-65 253.4 179 73.2
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 5.7e-65 251.9 179 72.1
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 5.7e-65 251.9 179 71.5
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 7.5e-65 251.5 179 72.1
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 9.8e-65 251.1 178 73.6
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.3e-64 250.8 182 70.3
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.8e-64 249.6 180 72.2
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 3.7e-64 249.2 180 72.2
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 3.7e-64 249.2 182 69.8
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 4.9e-64 248.8 179 70.9
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.9e-64 248.8 179 72.1
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 8.3e-64 248.1 177 72.3
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.1e-63 247.7 185 68.6
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.4e-63 247.3 246 57.7
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 1.4e-63 247.3 180 68.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.8e-63 246.9 180 71.7
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.8e-63 246.9 179 70.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.1e-63 246.1 180 70.6
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 4.1e-63 245.7 180 68.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 4.1e-63 245.7 182 70.9
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.4e-63 245.4 179 69.8
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 5.4e-63 245.4 180 68.9
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 7.0e-63 245.0 182 71.4
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 7.0e-63 245.0 180 67.8
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 9.2e-63 244.6 180 74.4
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 9.2e-63 244.6 183 70.5
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.6e-62 243.8 179 70.4
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.0e-62 243.4 180 69.4
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 3.5e-62 242.7 180 69.4
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 5.9e-62 241.9 179 68.2
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.0e-61 241.1 179 68.7
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.0e-61 241.1 182 69.8
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 2.3e-61 240.0 182 68.7
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 2.9e-61 239.6 182 68.7
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 3.8e-61 239.2 182 67.6
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 3.8e-61 239.2 182 69.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 6.6e-61 238.4 181 69.6
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 8.6e-61 238.0 183 69.4
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 8.6e-61 238.0 181 69.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.5e-60 236.5 181 68.5
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 7.3e-60 235.0 182 67.6
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 2.1e-59 233.4 204 61.8
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 8.0e-59 231.5 228 57.9
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 6.8e-58 228.4 184 64.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.5e-57 227.3 182 66.5
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.5e-57 227.3 184 65.8
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.7e-56 223.8 182 61.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.2e-56 223.4 182 61.5
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.7e-56 222.6 171 66.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 8.3e-56 221.5 170 68.2
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.1e-55 221.1 153 71.9
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.8e-55 220.3 170 67.6
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.4e-55 219.9 170 67.6
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 9.2e-55 218.0 169 62.7
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.6e-54 217.2 178 67.4
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 7.8e-54 214.9 165 66.7
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.7e-53 213.8 171 65.5
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.0e-53 213.0 157 70.7
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 5.6e-52 208.8 159 66.7
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.2e-49 201.1 140 69.3
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.2e-49 201.1 144 70.8
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.6e-49 199.9 143 68.5
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 4.4e-49 199.1 167 61.7
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.7e-48 197.2 148 66.2
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 4.6e-46 189.1 149 67.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.3e-45 187.6 140 66.4
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 8.6e-45 184.9 128 69.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 8.1e-43 178.3 180 53.9
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.1e-42 177.9 156 59.6
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 3.4e-41 172.9 184 54.3
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.4e-41 172.6 277 40.8
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.3e-40 171.0 147 68.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.1e-39 167.9 168 56.0
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 9.2e-39 164.9 147 68.7
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.9e-36 157.1 178 50.6
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.5e-36 156.8 170 55.3
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 7.3e-36 155.2 143 56.6
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.2e-35 154.5 139 59.0
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 1.4e-34 151.0 175 57.1
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.4e-34 150.2 114 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 9.9e-33 144.8 159 50.9
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.1e-30 137.1 247 38.5
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 1.7e-29 134.0 116 67.2
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.4e-26 124.4 105 60.0
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.4e-26 124.4 131 53.4
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 6.9e-26 122.1 100 55.0
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-25 121.3 85 69.4
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 4.9e-24 115.9 87 74.7
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.9e-23 114.0 73 87.7
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 4.2e-23 112.8 69 79.7
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 5.4e-23 112.5 192 38.5
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 7.1e-23 112.1 97 58.8
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-22 111.3 74 74.3
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 3.9e-21 106.3 178 43.3
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 3.9e-21 106.3 66 77.3
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.7e-16 90.9 87 58.6
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 6.4e-16 89.0 66 69.7
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 4.6e-14 82.8 58 69.0
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 5.6e-12 75.9 58 62.1
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 5.8e-09 65.9 50 60.0
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 2.2e-08 63.9 48 62.5
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.9e-08 62.8 43 65.1
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 8.4e-08 62.0 107 36.4


User provided reference genes

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