Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 5.3e-93 344.4 176 100.0
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 5.5e-74 281.2 172 83.7
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 8.0e-73 277.3 176 82.4
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 8.0e-73 277.3 176 82.4
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 1.4e-72 276.6 176 81.8
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.4e-72 276.6 172 82.0
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 3.4e-71 271.9 171 81.3
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 2.4e-61 239.2 172 73.8
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.3e-48 196.1 177 61.0
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.3e-48 196.1 177 61.0
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 6.4e-46 188.0 175 60.0
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 2.0e-44 183.0 178 56.2
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 5.0e-43 178.3 179 54.2
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 1.1e-42 177.2 177 56.5
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.5e-42 176.0 177 54.2
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 4.3e-42 175.3 176 52.3
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 5.6e-42 174.9 177 53.1
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 9.5e-42 174.1 177 54.2
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 9.5e-42 174.1 177 54.2
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 3.6e-41 172.2 172 55.2
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 4.7e-41 171.8 178 53.9
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 4.7e-41 171.8 178 53.9
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 8.1e-41 171.0 124 68.5
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.4e-40 170.2 116 78.4
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 2.3e-40 169.5 175 55.4
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 3.1e-40 169.1 118 66.9
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 3.1e-40 169.1 175 55.4
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.5e-39 166.8 174 51.1
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 2.0e-39 166.4 179 53.6
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 2.0e-39 166.4 156 53.2
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 2.0e-39 166.4 178 53.9
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 3.4e-39 165.6 182 50.5
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 3.4e-39 165.6 178 51.7
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 3.4e-39 165.6 181 53.6
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 1.3e-38 163.7 177 50.3
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 1.7e-38 163.3 124 65.3
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 1.7e-38 163.3 180 50.0
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 2.9e-38 162.5 182 50.5
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.9e-38 162.5 177 52.5
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 3.7e-38 162.2 199 48.7
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.9e-38 161.8 171 53.2
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 4.9e-38 161.8 172 52.3
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 4.9e-38 161.8 153 53.6
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 8.3e-38 161.0 179 52.0
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.1e-37 160.6 127 63.8
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 1.1e-37 160.6 147 56.5
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.4e-37 160.2 185 50.3
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.4e-37 160.2 154 55.8
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.9e-37 159.8 168 53.0
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 2.4e-37 159.5 182 50.5
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 2.4e-37 159.5 179 50.8
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 3.2e-37 159.1 160 57.5
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 3.2e-37 159.1 181 51.9
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 7.1e-37 157.9 183 50.8
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 7.1e-37 157.9 178 51.1
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 7.1e-37 157.9 124 61.3
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 7.1e-37 157.9 163 54.6
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 7.1e-37 157.9 181 53.0
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 9.2e-37 157.5 122 64.8
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 1.2e-36 157.1 142 58.5
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 1.6e-36 156.8 176 50.6
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 1.6e-36 156.8 185 49.7
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 3.5e-36 155.6 142 57.7
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 4.6e-36 155.2 119 63.0
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 4.6e-36 155.2 202 48.5
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 1.0e-35 154.1 132 56.8
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 1.7e-35 153.3 167 52.7
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 1.7e-35 153.3 223 43.0
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 2.3e-35 152.9 167 53.9
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 1.1e-34 150.6 148 53.4
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 1.5e-34 150.2 169 50.3
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 2.5e-34 149.4 167 49.1
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.1e-32 144.1 178 47.8
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 3.1e-32 142.5 154 55.8
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 6.8e-32 141.4 122 55.7
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 5.8e-31 138.3 130 56.2
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 3.8e-30 135.6 85 74.1
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 4.9e-30 135.2 168 48.2
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 6.4e-30 134.8 139 54.7
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.9e-29 133.3 138 52.2
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 3.2e-29 132.5 116 56.0
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 5.4e-29 131.7 179 45.8
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 7.8e-28 127.9 128 57.0
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 1.7e-27 126.7 120 55.0
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 3.3e-26 122.5 179 43.6
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 4.3e-26 122.1 97 62.9
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 9.6e-26 120.9 100 56.0
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.6e-25 120.2 94 60.6
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.1e-25 119.8 111 58.6
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 5.2e-24 115.2 98 59.2
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 3.4e-23 112.5 120 56.7
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 2.4e-21 106.3 101 51.5
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 4.2e-21 105.5 150 42.0
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 7.8e-20 101.3 135 43.0
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 5.6e-18 95.1 107 52.3
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 6.2e-17 91.7 116 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 2.2e-14 83.2 126 40.5
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.2e-14 83.2 113 46.0
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 5.4e-13 78.6 46 76.1
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 7.1e-13 78.2 176 36.9
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.1e-10 70.9 75 48.0
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 4.5e-07 58.9 78 43.6
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 4.5e-07 58.9 59 49.2
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 5.8e-07 58.5 143 35.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.8e-06 55.8 82 40.2
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 4.9e-06 55.5 56 46.4
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 4.9e-06 55.5 91 44.0
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 8.4e-06 54.7 75 40.0


User provided reference genes

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