Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.4e-134 483.0 249 100.0
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.4e-134 483.0 249 100.0
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.5e-104 382.5 249 83.1
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 8.0e-95 350.9 252 79.0
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.1e-94 350.5 249 78.3
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.1e-94 350.5 249 78.3
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 7.5e-93 344.4 249 77.9
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 5.0e-89 331.6 252 73.4
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 8.6e-89 330.9 239 78.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 2.5e-88 329.3 247 78.1
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 3.7e-84 315.5 254 73.6
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 1.9e-80 303.1 249 71.1
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.2e-79 300.4 247 69.6
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 5.2e-78 295.0 248 69.4
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 1.4e-75 287.0 250 70.4
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 1.4e-75 287.0 250 70.4
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 1.2e-74 283.9 246 70.3
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 1.5e-72 276.9 249 68.3
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 3.2e-67 259.2 246 65.9
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 6.2e-63 245.0 230 65.7
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 6.9e-54 214.9 256 54.3
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.1e-43 178.3 257 47.9
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.4e-40 168.3 259 50.2
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.8e-30 137.1 238 42.0
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.2e-28 130.2 235 43.0
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 6.5e-28 128.6 217 40.1
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 2.5e-27 126.7 216 41.7
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.5e-27 125.6 248 41.5
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 9.4e-27 124.8 237 40.9
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.1e-26 123.6 216 41.2
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.7e-26 123.2 212 39.6
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 3.6e-26 122.9 241 40.2
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 1.1e-24 117.9 215 40.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.5e-24 117.5 240 38.8
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 2.6e-24 116.7 255 36.1
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 5.7e-24 115.5 222 40.5
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 7.4e-24 115.2 250 38.8
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 9.7e-24 114.8 213 41.3
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.8e-23 113.2 251 36.3
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 8.2e-23 111.7 243 36.2
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.8e-22 110.5 245 38.0
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.4e-22 110.2 227 38.8
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 5.3e-22 109.0 231 39.4
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 7.0e-22 108.6 242 36.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 3.4e-21 106.3 206 41.3
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.5e-21 105.9 231 39.8
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 5.9e-21 105.5 220 37.3
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 7.7e-21 105.1 224 37.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.3e-20 104.4 224 38.4
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 1.3e-20 104.4 240 38.8
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.7e-20 104.0 243 36.6
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.7e-20 104.0 254 36.6
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 2.2e-20 103.6 225 38.7
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.2e-20 103.6 242 37.2
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 3.8e-20 102.8 242 33.5
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.1e-19 101.3 242 34.7
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.1e-19 101.3 218 37.2
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 1.4e-19 100.9 230 36.5
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.4e-19 100.9 231 37.2
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.9e-19 100.5 245 35.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 4.2e-19 99.4 210 39.0
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 4.2e-19 99.4 213 38.0
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 4.2e-19 99.4 205 36.6
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 9.4e-19 98.2 211 35.5
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.4e-19 98.2 248 35.1
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-18 97.8 229 35.8
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 1.6e-18 97.4 164 40.2
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.1e-18 97.1 222 37.8
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.7e-18 96.7 253 35.2
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.0e-17 94.7 206 36.9
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.0e-17 94.7 213 36.6
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.4e-17 94.4 243 32.9
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.8e-17 94.0 231 32.5
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 2.3e-17 93.6 266 31.6
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.0e-17 93.2 220 33.6
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.9e-17 92.8 202 37.1
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.2e-17 92.4 176 39.2
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 6.7e-17 92.0 209 34.4
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.1e-16 91.3 108 48.1
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 2.6e-16 90.1 205 36.1
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 3.3e-16 89.7 205 36.1
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.3e-16 89.7 206 37.4
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 3.3e-16 89.7 201 35.3
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 3.3e-16 89.7 192 34.4
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 5.7e-16 89.0 210 35.2
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.7e-16 89.0 206 36.9
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 7.4e-16 88.6 185 36.2
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 9.7e-16 88.2 220 32.7
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.3e-15 87.8 206 35.4
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.3e-15 87.8 202 36.6
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.3e-15 87.8 210 36.7
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 1.7e-15 87.4 215 35.8
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 2.2e-15 87.0 249 34.1
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 2.2e-15 87.0 255 31.4
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.2e-15 87.0 243 36.2
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 2.8e-15 86.7 124 39.5
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 3.7e-15 86.3 204 32.4
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.3e-15 85.5 205 34.6
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 8.2e-15 85.1 227 36.1
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.4e-14 84.3 208 33.2
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.4e-14 84.3 208 33.2
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.4e-14 84.3 222 34.2
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.8e-14 84.0 242 34.3
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.8e-14 84.0 197 35.0
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.8e-14 84.0 282 29.1
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.1e-14 83.2 189 34.4
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.6e-13 80.9 199 34.7
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.6e-13 80.1 227 32.6
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 3.5e-13 79.7 128 39.1
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 5.9e-13 79.0 185 32.4
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.3e-12 77.8 205 35.1
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 1.3e-12 77.8 239 29.7
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.3e-12 77.8 230 31.7
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.7e-12 77.4 145 34.5
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 1.7e-12 77.4 219 30.6
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.2e-12 77.0 180 35.0
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.9e-12 76.6 209 32.5
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 3.8e-12 76.3 128 35.9
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.5e-12 75.5 189 33.3
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.1e-11 74.7 240 30.0
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 1.1e-11 74.7 186 32.3
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 5.5e-11 72.4 121 38.8
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 1.6e-10 70.9 218 31.2
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.7e-10 69.3 231 27.3
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 6.1e-10 68.9 235 31.5
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 6.1e-10 68.9 191 31.4
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.0e-09 68.2 211 32.7
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.0e-09 68.2 228 32.9
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.0e-09 68.2 206 30.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.4e-09 67.8 221 33.0
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.8e-09 67.4 103 40.8
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.8e-09 67.4 229 31.9
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.8e-09 67.4 103 42.7
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.3e-09 67.0 213 31.5
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.0e-09 66.2 211 31.8
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 5.2e-09 65.9 212 32.1
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 8.8e-09 65.1 106 41.5
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 8.8e-09 65.1 133 35.3
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.2e-08 64.7 244 27.9
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 1.2e-08 64.7 220 30.9
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.2e-08 64.7 243 31.3
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.2e-08 64.7 85 47.1
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.5e-08 64.3 224 30.4
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 2.6e-08 63.5 193 30.6
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 5.7e-08 62.4 234 29.9
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 5.7e-08 62.4 224 28.6
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.7e-08 62.4 194 34.0
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.3e-07 61.2 240 29.6
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 2.2e-07 60.5 227 29.5
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 2.2e-07 60.5 183 31.1
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.7e-07 59.7 241 27.4
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 6.3e-07 58.9 205 33.2
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 8.2e-07 58.5 208 32.2
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 8.2e-07 58.5 233 27.9
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 1.4e-06 57.8 102 39.2
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-06 57.8 206 30.1
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 1.8e-06 57.4 233 27.5
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 2.4e-06 57.0 86 39.5
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 2.4e-06 57.0 213 31.0
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 5.3e-06 55.8 235 27.2
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.3e-06 55.8 56 51.8
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 7.0e-06 55.5 143 30.1
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 7.0e-06 55.5 89 40.4
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 9.1e-06 55.1 204 29.9
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 9.1e-06 55.1 203 32.0


User provided reference genes

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