Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g04890 Schrenkiella parvula HOM05D007484 ORTHO05D008290 3.8e-227 791.2 403 100.0
Thhalv10024022m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.0e-131 472.6 401 60.3
BraA01t03152Z Brassica rapa HOM05D007484 ORTHO05D008290 5.8e-127 458.4 398 57.8
BolC1t03792H Brassica oleracea HOM05D007484 ORTHO05D008290 7.6e-127 458.0 398 57.8
A01p30140 Brassica napus HOM05D007484 ORTHO05D008290 1.3e-126 457.2 398 57.8
Thhalv10023885m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.8e-126 455.7 398 59.0
Thhalv10024043m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 6.4e-126 454.9 401 59.9
Thhalv10023878m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.9e-125 453.4 401 59.9
C01p38280 Brassica napus HOM05D007484 ORTHO05D008290 9.2e-125 451.1 398 57.0
C06p16440 Brassica napus HOM05D007484 ORTHO05D008290 1.2e-124 450.7 409 56.2
BolC6t36847H Brassica oleracea HOM05D007484 ORTHO05D008290 1.2e-124 450.7 409 56.2
Thhalv10023802m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.9e-123 445.7 410 57.1
BolC1t03787H Brassica oleracea HOM05D007484 ORTHO05D008290 4.3e-122 442.2 398 56.8
BcaC08g44240 Brassica carinata HOM05D007484 ORTHO05D008290 6.2e-121 438.3 398 56.8
Thhalv10024036m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.8e-120 436.8 401 58.1
Thhalv10023845m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.8e-119 431.8 398 57.5
AT1G61320 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 7.1e-117 424.9 404 55.9
Sp2g03170 Schrenkiella parvula HOM05D007484 ORTHO05D008290 1.6e-116 423.7 400 54.8
AL2G15000 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 1.5e-114 417.2 404 55.4
Sp2g04880 Schrenkiella parvula HOM05D007484 ORTHO05D008290 2.8e-113 412.9 401 58.9
Carub.0002s1106 Capsella rubella HOM05D007484 ORTHO05D008290 1.8e-112 410.2 405 52.6
AL2G15010 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 7.6e-111 404.8 401 54.4
Thhalv10024091m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 4.9e-110 402.1 287 72.1
Carub.0002s1064 Capsella rubella HOM05D007484 ORTHO05D008290 1.4e-109 400.6 401 55.1
Carub.0002s1104 Capsella rubella HOM05D007484 ORTHO05D008290 3.5e-108 396.0 405 52.1
AT1G61330 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 6.9e-104 381.7 406 51.2
Carub.0005s0816 Capsella rubella HOM05D007484 ORTHO05D008290 9.0e-104 381.3 405 50.6
BcaC08g44241 Brassica carinata HOM05D007484 ORTHO05D008290 1.7e-102 377.1 421 49.9
Thhalv10023947m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 2.9e-102 376.3 385 53.2
Carub.0002s1107 Capsella rubella HOM05D007484 ORTHO05D008290 1.3e-86 324.3 287 57.1
Thhalv10023839m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.4e-85 320.9 287 60.6
CARHR051310 Cardamine hirsuta HOM05D007484 ORTHO05D008290 3.2e-85 319.7 308 53.6
C06p16450 Brassica napus HOM05D007484 ORTHO05D008290 5.7e-82 308.9 284 54.9
BolC6t36848H Brassica oleracea HOM05D007484 ORTHO05D008290 5.7e-82 308.9 284 54.9
A01p30150 Brassica napus HOM05D007484 ORTHO05D008290 2.0e-79 300.4 276 55.1
BcaB04g20332 Brassica carinata HOM05D007484 ORTHO05D008290 1.1e-69 268.1 337 45.4
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 3.2e-69 266.5 396 36.6
C01p38250 Brassica napus HOM05D007484 ORTHO05D008290 4.7e-68 262.7 398 40.2
CARHR053380 Cardamine hirsuta HOM05D007484 ORTHO05D008290 1.3e-65 254.6 184 68.5
Aa31LG2G9340 Aethionema arabicum HOM05D007484 ORTHO05D008290 5.9e-63 245.7 395 38.0
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 5.2e-51 206.1 394 32.0
Haze_06572 Corylus avellana HOM05D007484 ORTHO05D008290 6.8e-51 205.7 394 32.0
Dinv40482 Davidia involucrata HOM05D007484 ORTHO05D008290 4.1e-48 196.4 395 30.4
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 9.1e-48 195.3 393 31.0
BraA01t03151Z Brassica rapa HOM05D007484 ORTHO05D008290 5.9e-47 192.6 183 51.9
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 1.5e-45 188.0 399 30.1
Sabra11G0029500 Salix brachista HOM05D007484 ORTHO05D008290 2.3e-43 180.6 409 30.1
Potri.011G042900 Populus trichocarpa HOM05D007484 ORTHO05D008290 6.8e-43 179.1 403 30.5
Medtr7g076760 Medicago truncatula HOM05D007484 ORTHO05D008290 5.7e-42 176.0 393 28.5
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.2e-39 168.3 391 28.1
Medtr7g076570 Medicago truncatula HOM05D007484 ORTHO05D008290 1.6e-39 167.9 397 28.7
Lalb_Chr20g0122271 Lupinus albus HOM05D007484 ORTHO05D008290 3.5e-39 166.8 392 30.1
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 2.9e-38 163.7 345 30.1
Potri.004G034500 Populus trichocarpa HOM05D007484 ORTHO05D008290 8.6e-38 162.2 402 27.6
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 8.0e-36 155.6 402 28.6
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 1.4e-35 154.8 399 27.1
Medtr7g050670 Medicago truncatula HOM05D007484 ORTHO05D008290 1.8e-35 154.5 396 27.3
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 4.0e-35 153.3 399 27.6
CANSAT56G1153 Cannabis sativa HOM05D007484 ORTHO05D008290 5.2e-35 152.9 404 27.2
Peaxi162Scf00083g00015 Petunia axillaris HOM05D007484 ORTHO05D008290 1.3e-33 148.3 400 26.2
VMungo0540G2082 Vigna mungo HOM05D007484 ORTHO05D008290 1.3e-33 148.3 393 27.5
Atru.chr10.2009 Acer truncatum HOM05D007484 ORTHO05D008290 6.4e-33 146.0 397 25.7
Thhalv10023890m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 8.3e-33 145.6 96 67.7
Medtr4g088845 Medicago truncatula HOM05D007484 ORTHO05D008290 1.8e-32 144.4 393 26.5
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 1.8e-32 144.4 395 26.3
Phvul.006G192000 Phaseolus vulgaris HOM05D007484 ORTHO05D008290 2.4e-32 144.1 393 26.7
Glyma.13G246100 Glycine max HOM05D007484 ORTHO05D008290 1.2e-31 141.7 397 27.5
PGR004G1436 Punica granatum HOM05D007484 ORTHO05D008290 1.2e-31 141.7 397 25.7
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 8.6e-30 135.6 231 34.2
Nn1g06758 Nelumbo nucifera HOM05D007484 ORTHO05D008290 1.5e-29 134.8 394 25.1
Peaxi162Scf00149g00517 Petunia axillaris HOM05D007484 ORTHO05D008290 1.5e-29 134.8 404 26.0
Lj6g0012024 Lotus japonicus HOM05D007484 ORTHO05D008290 1.9e-29 134.4 405 24.2
Aqoxy4G00756 Aquilegia oxysepala HOM05D007484 ORTHO05D008290 6.2e-28 129.4 401 26.4
C06p16460 Brassica napus HOM05D007484 ORTHO05D008290 1.5e-26 124.8 95 66.3
SalBow8G0887 Salvia bowleyana HOM05D007484 ORTHO05D008290 3.4e-26 123.6 353 26.6
MD10G1303300 Malus domestica HOM05D007484 ORTHO05D008290 9.8e-26 122.1 406 25.4
PGSC0003DMG400043893 Solanum tuberosum HOM05D007484 ORTHO05D008290 3.7e-25 120.2 400 25.8
TWI38G1471 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 1.9e-24 117.9 326 26.4
PGSC0003DMG400037537 Solanum tuberosum HOM05D007484 ORTHO05D008290 2.4e-24 117.5 400 25.2
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 3.2e-24 117.1 399 25.3
Nitab4.5_0009994g0020 Nicotiana tabacum HOM05D007484 ORTHO05D008290 1.9e-21 107.8 399 24.3
BraA01t03150Z Brassica rapa HOM05D007484 ORTHO05D008290 2.1e-20 104.4 83 65.1
CARHR053010 Cardamine hirsuta HOM05D007484 ORTHO05D008290 4.7e-20 103.2 67 67.2
Nitab4.5_0000190g0090 Nicotiana tabacum HOM05D007484 ORTHO05D008290 1.8e-19 101.3 402 23.9
SGA_v2.0_scaffold739G53544 Striga asiatica HOM05D007484 ORTHO05D008290 1.8e-19 101.3 382 22.0
Cpa.g.sc27.122 Carica papaya HOM05D007484 ORTHO05D008290 6.8e-19 99.4 284 26.8
CARHR053390 Cardamine hirsuta HOM05D007484 ORTHO05D008290 2.6e-18 97.4 93 51.6
Actinidia26998 Actinidia chinensis HOM05D007484 ORTHO05D008290 5.8e-18 96.3 323 25.4
Migut.M01212 Erythranthe guttata HOM05D007484 ORTHO05D008290 7.5e-18 95.9 397 21.9
Cpa.g.sc27.126 Carica papaya HOM05D007484 ORTHO05D008290 9.9e-18 95.5 292 27.4
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 2.2e-17 94.4 412 23.5
CARHR053000 Cardamine hirsuta HOM05D007484 ORTHO05D008290 1.4e-16 91.7 66 62.1
CDE05G1832 Ceratophyllum demersum HOM05D000051 ORTHO05D000493 9.5e-13 79.0 192 30.7
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 2.1e-12 77.8 284 26.1
CDE02G0635 Ceratophyllum demersum HOM05D000312 ORTHO05D000493 9.9e-10 68.9 192 28.6
MBI02_g05995_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 4.9e-09 66.6 339 23.3
Nn1g07083 Nelumbo nucifera HOM05D000576 ORTHO05D003312 6.4e-09 66.2 288 22.9
PSO724G1238 Papaver somniferum HOM05D000051 ORTHO05D000015 8.4e-09 65.9 363 24.2
PSO832G2408 Papaver somniferum HOM05D000051 ORTHO05D000015 4.1e-08 63.5 206 27.7
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 1.6e-07 61.6 182 25.8
Nn5g27409 Nelumbo nucifera HOM05D000576 ORTHO05D000368 2.7e-07 60.8 253 24.5
Aqoxy4G01707 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.0e-07 59.7 185 27.6
Aqoxy1G03334 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.0e-06 58.9 194 28.4
Lsat_1_v5_gn_4_16880 Lactuca sativa HOM05D000312 ORTHO05D000221 1.0e-06 58.9 196 26.5
Lsat_1_v5_gn_4_16941 Lactuca sativa HOM05D000312 ORTHO05D000221 1.0e-06 58.9 193 28.0
Nitab4.5_0004837g0050 Nicotiana tabacum HOM05D000051 ORTHO05D000015 1.0e-06 58.9 187 29.4
Aqoxy1G03313 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.3e-06 58.5 176 26.7
Haze_06766 Corylus avellana HOM05D000130 ORTHO05D000772 1.3e-06 58.5 138 28.3
PSO356G0046 Papaver somniferum HOM05D000051 ORTHO05D000015 1.3e-06 58.5 223 26.0
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 1.7e-06 58.2 262 25.2
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 1.7e-06 58.2 407 21.9
AL4G41310 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 2.3e-06 57.8 259 25.1
AT2G42730 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.3e-06 57.8 259 25.1
CDE05G0823 Ceratophyllum demersum HOM05D003087 ORTHO05D003312 3.9e-06 57.0 270 23.7
Thhalv10015855m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 3.9e-06 57.0 265 23.4
Psat6g025520 Pisum sativum HOM05D000312 ORTHO05D000221 3.9e-06 57.0 187 26.7
Prupe.8G148700 Prunus persica HOM05D000312 ORTHO05D000221 3.9e-06 57.0 180 23.3
Lsat_1_v5_gn_4_16900 Lactuca sativa HOM05D000312 ORTHO05D000221 5.1e-06 56.6 190 25.3
Lsat_1_v5_gn_4_17020 Lactuca sativa HOM05D000312 ORTHO05D000221 5.1e-06 56.6 346 21.7
GSVIVG01016843001 Vitis vinifera HOM05D001477 ORTHO05D001182 5.1e-06 56.6 236 25.4
Aqoxy5G02413 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.6e-06 56.2 408 22.1
Solyc09g009920.1 Solanum lycopersicum HOM05D000051 ORTHO05D000015 8.7e-06 55.8 420 22.4


User provided reference genes

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