Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1489.6 791 100.0
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 0.0e+00 1392.1 776 95.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 0.0e+00 1375.5 776 93.7
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1373.6 778 93.6
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1366.3 777 94.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 0.0e+00 1365.1 777 93.1
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 0.0e+00 1364.0 777 94.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1362.8 770 93.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 0.0e+00 1360.5 770 93.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 0.0e+00 1356.7 771 93.8
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1354.7 771 93.9
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 0.0e+00 1351.3 776 92.9
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 0.0e+00 1278.8 778 88.2
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1224.2 788 80.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1083.6 780 73.8
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 782 74.8
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1077.8 780 73.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-311 1073.2 780 73.5
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 3.8e-311 1071.2 787 72.3
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 4.9e-311 1070.8 750 76.0
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 6.5e-311 1070.5 786 72.8
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 791 70.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.6e-309 1065.8 733 74.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 2.7e-309 1065.1 787 71.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.7e-309 1065.1 738 73.8
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 4.5e-309 1064.3 729 74.9
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 4.5e-309 1064.3 760 72.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 4.5e-309 1064.3 757 72.7
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 7.7e-309 1063.5 796 71.7
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 7.7e-309 1063.5 792 71.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 6.5e-308 1060.4 772 71.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 8.5e-308 1060.1 783 72.9
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 778 72.9
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.9e-307 1058.9 781 71.4
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.2e-307 1058.1 777 72.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.2e-306 1056.2 787 70.5
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 780 71.4
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.6e-306 1054.7 722 76.0
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 8.0e-306 1053.5 790 71.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 803 70.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 781 71.8
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 5.2e-305 1050.8 781 71.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.2e-304 1049.7 794 71.5
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 742 73.6
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.0e-304 1048.9 807 69.9
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.0e-304 1048.9 784 69.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 2.6e-304 1048.5 782 69.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.4e-304 1048.1 773 71.4
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.4e-304 1048.1 732 73.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 4.4e-304 1047.7 785 71.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.7e-303 1045.8 788 70.1
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 749 71.4
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 796 71.1
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 775 74.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 750 74.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 5.9e-301 1037.3 796 68.2
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 7.7e-301 1036.9 796 67.7
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 5.0e-300 1034.2 795 67.8
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 5.0e-300 1034.2 779 69.4
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 795 68.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 3.3e-299 1031.6 782 69.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 6.1e-298 1027.3 795 71.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 6.1e-298 1027.3 790 70.6
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 779 68.7
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 6.8e-297 1023.8 714 75.9
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 2.6e-296 1021.9 787 68.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 4.4e-296 1021.1 774 72.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.4e-296 1021.1 776 69.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 9.8e-296 1020.0 728 72.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.3e-295 1019.6 826 67.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.3e-292 1008.8 762 69.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 2.3e-292 1008.8 794 68.9
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.1e-291 1006.5 786 69.3
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.1e-291 1006.5 786 69.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 9.5e-291 1003.4 707 72.6
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.4e-289 999.6 754 70.4
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 5.2e-289 997.7 763 69.1
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 6.8e-289 997.3 779 68.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 3.4e-288 995.0 792 68.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.7e-287 992.6 783 67.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 8.3e-287 990.3 730 71.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 3.2e-286 988.4 820 66.0
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.7e-284 982.6 708 72.5
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.1e-283 979.9 778 68.3
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 3.2e-278 961.8 728 69.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.1e-278 961.4 754 65.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 5.4e-278 961.1 752 68.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.2e-277 959.9 733 69.8
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.5e-275 953.0 785 67.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.5e-275 953.0 785 66.6
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.5e-275 952.2 782 69.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 6.2e-274 947.6 726 69.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.0e-272 942.6 658 73.1
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 4.4e-272 941.4 791 63.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 6.0e-269 931.0 725 68.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.8e-263 911.8 749 65.4
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.0e-228 797.3 545 73.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.8e-228 796.6 640 71.7
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.1e-227 793.9 545 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 9.0e-225 784.3 746 55.9
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 9.4e-222 774.2 746 55.6
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.6e-221 773.5 720 57.2
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.9e-216 755.0 749 52.7
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 2.2e-215 753.1 719 56.6
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.3e-209 731.9 543 65.0
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.1e-203 714.1 533 64.7
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.3e-196 689.9 531 64.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.6e-181 639.4 520 60.8
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.7e-176 623.2 416 73.6
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 3.6e-165 586.3 405 73.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.1e-156 556.6 416 65.1
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.3e-141 508.1 343 74.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.2e-129 466.5 269 83.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.5e-91 340.5 493 41.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.9e-91 339.7 280 63.6
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.0e-90 339.0 684 33.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-87 328.6 265 61.9
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.2e-82 311.2 598 39.5
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.8e-68 265.0 284 54.6
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.9e-65 255.0 585 32.1
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.0e-63 249.2 353 45.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 6.4e-53 213.4 119 91.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 6.0e-51 206.8 149 75.2
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 3.4e-38 164.5 99 76.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 9.2e-36 156.4 83 84.3
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-31 141.7 157 52.9
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 4.4e-22 110.9 54 88.9
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.0e-18 99.8 91 58.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 3.9e-18 97.8 133 46.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.8e-15 89.0 102 49.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 4.0e-15 87.8 75 65.3
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.1e-10 70.9 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 9.6e-09 66.6 73 52.1
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.4e-07 62.0 79 43.0
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 9.0e-07 60.1 81 42.0


User provided reference genes

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