Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 0.0e+00 3132.8 1819 100.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 0.0e+00 2411.7 1716 80.1
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 0.0e+00 2351.2 1796 78.8
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 0.0e+00 2351.2 1798 78.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 0.0e+00 2301.6 1837 75.7
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 0.0e+00 2270.7 1796 75.9
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 0.0e+00 2268.4 1797 76.7
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 0.0e+00 2190.2 1836 73.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 0.0e+00 2183.7 1614 76.6
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 0.0e+00 2181.4 1708 73.1
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 0.0e+00 2169.4 1717 71.5
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 0.0e+00 1860.1 1717 62.6
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 0.0e+00 1580.5 1782 54.5
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 5.4e-281 972.2 1731 41.5
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 9.2e-281 971.5 1727 41.2
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 6.8e-276 955.3 1738 40.8
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.6e-271 938.3 1742 40.8
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.9e-270 937.2 1727 40.2
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 4.7e-269 932.6 1742 40.3
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 3.7e-266 922.9 1749 40.9
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.4e-257 894.4 1757 39.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.9e-257 894.0 1719 40.1
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.9e-257 894.0 1719 40.1
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 6.6e-255 885.6 1782 39.3
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.0e-251 874.0 1736 37.8
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 3.9e-247 859.8 1717 38.3
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 4.0e-244 849.7 1696 38.6
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 2.0e-243 847.4 1693 38.9
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 9.9e-243 845.1 1763 37.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.4e-241 841.3 1778 36.7
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 2.7e-240 837.0 1717 39.5
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 6.0e-240 835.9 1801 36.7
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 9.0e-236 822.0 1695 37.6
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.6e-235 820.5 1839 37.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 3.8e-234 816.6 1727 37.3
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 4.2e-233 813.1 1735 38.2
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 7.4e-230 802.4 1735 39.3
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.1e-229 800.8 1698 37.5
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 5.3e-228 796.2 1753 37.8
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.3e-226 791.6 1699 37.1
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 3.8e-226 790.0 1630 38.9
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 9.3e-225 785.4 1720 37.1
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.8e-223 781.2 1706 37.3
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 8.7e-223 778.9 1685 36.4
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.2e-219 768.5 1695 36.8
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 5.9e-219 766.1 1690 36.3
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.7e-216 757.3 1825 35.3
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 3.7e-213 746.9 1693 36.1
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 4.8e-213 746.5 1673 36.0
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.4e-212 745.0 1773 34.5
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 3.3e-206 723.8 1706 36.2
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 1.8e-199 701.4 1718 35.3
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.8e-199 699.1 1745 34.6
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 3.3e-198 697.2 1868 34.4
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.2e-194 684.5 1668 35.2
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 5.5e-193 679.9 1700 34.2
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-192 678.7 1847 33.6
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 2.1e-192 677.9 1794 33.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 4.0e-191 673.7 1694 33.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 5.7e-190 669.8 1662 33.5
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.2e-189 667.9 1120 40.2
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 2.2e-189 667.9 1708 34.0
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.4e-188 665.2 1709 34.2
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 5.9e-187 659.8 1757 33.1
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.9e-186 657.5 1747 33.4
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.9e-186 657.5 1672 34.4
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 5.0e-186 656.8 2099 30.7
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.4e-185 652.5 1584 35.0
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.8e-183 646.4 1285 38.7
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.3e-181 639.8 1686 35.7
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.8e-180 638.3 1729 32.9
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.8e-178 630.6 1763 33.0
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.1e-177 629.0 1706 32.9
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.8e-167 595.1 1673 32.8
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 9.8e-166 589.3 1749 32.1
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.9e-164 585.1 933 40.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.4e-164 584.7 1720 31.3
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 7.0e-164 583.2 1760 31.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 7.3e-153 546.6 1639 31.9
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.6e-147 528.9 1535 32.9
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.6e-136 491.1 1693 28.8
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 7.8e-131 473.4 1748 28.9
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.6e-126 458.4 553 46.8
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.6e-123 447.6 1445 31.5
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.6e-123 447.6 1445 31.5
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.6e-120 439.1 880 35.8
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 3.7e-120 438.0 1467 30.8
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.2e-115 422.9 1006 38.0
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.2e-108 398.3 927 37.3
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-105 389.0 803 33.5
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.0e-101 374.4 435 46.9
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.4e-87 329.7 189 87.3
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.6e-83 315.1 1021 29.2
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.0e-82 313.5 872 29.8
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.7e-81 307.8 872 32.6
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.8e-72 278.9 1722 25.2
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.7e-72 278.5 474 38.0
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.1e-71 276.9 1310 25.0
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.0e-70 272.7 929 31.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.9e-69 268.9 1071 27.0
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-68 266.2 910 30.9
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.6e-67 263.1 249 57.8
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 6.8e-66 257.7 841 33.8
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-60 240.0 640 30.8
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.4e-57 228.4 1002 31.0
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 4.1e-55 221.9 604 29.5
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 7.8e-54 217.6 233 47.6
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.3e-53 216.9 248 46.4
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.3e-53 216.9 338 40.8
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 3.4e-49 202.2 828 31.4
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.0e-45 190.7 235 44.3
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.1e-44 187.2 225 50.7
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.2e-41 177.2 193 49.7
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.1e-39 170.6 147 52.4
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.4e-39 170.2 193 45.6
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.9e-36 159.8 221 45.2
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.2e-31 141.0 131 58.8
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 3.3e-28 132.5 257 47.5
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 5.6e-28 131.7 711 29.4
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.4e-26 127.1 189 38.6
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.1e-26 125.9 463 28.5
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.5e-25 123.6 140 42.1
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 2.0e-25 123.2 131 48.1
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.6e-25 122.9 93 62.4
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.7e-24 120.2 533 31.9
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.9e-24 118.6 215 37.2
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 8.4e-24 117.9 668 31.9
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.1e-23 117.5 659 28.2
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.4e-23 117.1 162 37.0
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.4e-23 115.2 980 26.5
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.6e-22 113.6 460 27.4
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 1.9e-20 106.7 423 25.5
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 6.2e-19 101.7 80 61.2
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-18 100.5 113 55.8
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.4e-17 95.9 103 39.8
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.8e-16 92.4 691 26.9
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-14 86.3 79 50.6
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 6.0e-14 85.1 62 56.5
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 3.9e-13 82.4 79 49.4
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.5e-12 79.7 327 26.3
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.3e-12 78.2 124 36.3
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.6e-11 75.9 62 54.8
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 4.8e-11 75.5 69 53.6
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.4e-09 69.3 59 54.2
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 5.8e-09 68.6 59 52.5
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 5.8e-09 68.6 80 46.2
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 7.6e-09 68.2 125 42.4
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 4.9e-08 65.5 154 31.8
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 6.4e-08 65.1 73 46.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-06 59.7 47 53.2


User provided reference genes

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