Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1261.1 634 100.0
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1237.2 634 97.8
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1237.2 634 97.6
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1235.7 634 97.5
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1233.4 634 97.2
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1232.6 634 97.2
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1232.6 634 97.2
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1232.6 634 97.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1231.5 633 97.2
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1229.9 633 96.8
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1229.2 632 97.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1228.8 634 97.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1228.0 634 97.0
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1211.1 633 94.9
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1196.8 633 93.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1195.6 632 94.0
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1195.3 632 94.0
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1192.2 633 93.5
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 633 91.9
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 634 90.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 632 89.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 632 89.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 629 89.3
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 632 89.4
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 630 89.2
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 630 88.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 630 89.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 630 88.9
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 633 88.6
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 630 88.4
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 633 88.5
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 630 89.2
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 632 89.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 632 88.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 630 88.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 630 89.2
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 632 89.1
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 630 88.6
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 630 89.0
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 627 89.3
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 630 88.7
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 630 89.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 630 88.4
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 630 88.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 630 88.7
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 633 87.7
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 632 88.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 632 87.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 630 88.6
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 638 86.8
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 630 88.6
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 630 88.7
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 632 88.1
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 631 88.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 628 88.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 630 87.6
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 629 88.1
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 87.9
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 632 87.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 630 87.9
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 630 88.4
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 630 88.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 630 87.5
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 627 88.4
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 640 86.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 87.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 630 87.6
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 632 87.8
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 632 87.7
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 624 88.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 630 87.9
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 630 87.5
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 632 87.7
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 632 87.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 630 87.3
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 630 87.5
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 632 87.3
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 632 87.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 640 85.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 632 87.5
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 632 87.3
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 87.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 657 84.8
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 85.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 626 87.5
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 630 87.8
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 632 86.2
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 630 86.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 630 86.8
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 630 86.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 630 86.2
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 632 87.0
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 629 87.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 630 85.7
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 630 86.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 630 85.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 640 83.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 582 90.0
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 8.9e-308 1059.7 628 82.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.2e-307 1059.3 640 83.3
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 2.6e-307 1058.1 628 81.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.0e-303 1046.2 628 80.3
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.9e-297 1025.4 634 78.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.5e-291 1004.2 635 77.0
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.4e-281 972.6 534 89.0
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.0e-279 964.9 537 88.6
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 5.1e-279 964.1 534 87.8
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 6.7e-271 937.2 642 72.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.3e-266 922.9 629 73.0
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.7e-264 915.2 647 71.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.2e-261 905.6 636 72.5
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.8e-258 894.8 494 88.9
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 7.7e-243 844.0 503 83.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 5.0e-242 841.3 630 70.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.2e-241 838.6 503 82.9
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 5.9e-235 817.8 637 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.1e-233 813.5 494 81.4
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 9.4e-233 810.4 630 68.3
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.3e-225 785.4 638 61.9
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 8.1e-200 701.0 444 79.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-191 672.9 535 66.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.5e-182 643.7 639 52.6
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.0e-174 616.7 443 71.6
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.9e-173 612.8 354 84.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.0e-162 577.8 404 74.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.1e-156 557.8 308 90.3
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.1e-151 539.7 275 98.5
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.2e-148 528.5 292 88.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 6.3e-112 409.1 515 43.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.5e-92 344.7 194 86.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.0e-86 322.8 233 70.4
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.3e-84 316.6 178 88.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.3e-82 310.8 231 68.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.2e-75 288.5 162 85.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 4.4e-73 280.0 163 84.0
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.4e-66 258.5 630 31.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 9.9e-57 225.7 273 48.0
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.1e-50 205.7 229 53.3
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 4.5e-41 173.7 98 85.7
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.4e-40 169.5 98 83.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.4e-39 168.7 104 76.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 7.2e-39 166.4 99 81.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.0e-37 161.0 90 88.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.5e-36 158.7 156 59.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.9e-36 158.3 74 100.0
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.3e-36 157.1 86 83.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 9.0e-34 149.4 122 64.8
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.2e-32 144.8 91 78.0
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.9e-32 144.4 91 78.0
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-21 108.2 116 53.4
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 3.9e-21 107.5 53 96.2
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.1e-21 107.1 63 81.0
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.9e-16 91.3 58 74.1
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.8e-16 90.9 51 82.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.0e-16 90.5 60 71.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.5e-15 88.2 49 81.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.7e-11 74.3 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-09 68.9 65 52.3


User provided reference genes

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